Strain Fitness in Pseudomonas simiae WCS417 around PS417_15280

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15275 and PS417_15280 are separated by 1 nucleotidesPS417_15280 and PS417_15285 are separated by 41 nucleotides PS417_15275: PS417_15275 - type VI secretion protein, at 3,351,399 to 3,352,727 _15275 PS417_15280: PS417_15280 - type VI secretion protein, at 3,352,729 to 3,353,178 _15280 PS417_15285: PS417_15285 - type VI secretion protein, at 3,353,220 to 3,354,392 _15285 Position (kb) 3352 3353 3354Strain fitness (log2 ratio) -2 -1 0 1at 3351.975 kb on + strand, within PS417_15275at 3351.982 kb on + strand, within PS417_15275at 3351.983 kb on - strand, within PS417_15275at 3352.027 kb on - strandat 3352.246 kb on + strand, within PS417_15275at 3352.710 kb on - strandat 3352.883 kb on + strand, within PS417_15280at 3353.157 kb on + strandat 3353.158 kb on - strandat 3353.235 kb on + strandat 3353.350 kb on + strand, within PS417_15285

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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3,351,975 + PS417_15275 0.43 -0.1
3,351,982 + PS417_15275 0.44 +0.1
3,351,983 - PS417_15275 0.44 -0.7
3,352,027 - +0.4
3,352,246 + PS417_15275 0.64 -0.3
3,352,710 - +1.2
3,352,883 + PS417_15280 0.34 -0.4
3,353,157 + -2.1
3,353,158 - -0.0
3,353,235 + +0.8
3,353,350 + PS417_15285 0.11 -0.6

Or see this region's nucleotide sequence