Strain Fitness in Pseudomonas simiae WCS417 around PS417_15230

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
3,338,663	+		PS417_15225	0.34	-1.4
3,338,663	+				-0.6
3,338,664	-		PS417_15225	0.34	-0.6
3,338,969	-		PS417_15225	0.67	+2.0
3,339,109	+				+1.4
3,339,109	+		PS417_15225	0.82	-1.9
3,339,110	-		PS417_15225	0.82	+1.2
3,339,128	+		PS417_15225	0.84	-3.4
3,339,128	+		PS417_15225	0.84	+0.6
3,339,129	-		PS417_15225	0.84	-1.4
3,339,129	-		PS417_15225	0.84	-0.9
3,339,200	+				-0.4
3,339,283	-				+1.6
3,339,283	-				-0.9
3,339,316	+				+3.9
3,339,348	+				+0.3
3,339,349	-				-2.3
3,339,349	-				-1.6
3,339,484	+				+1.0
3,339,485	-				-0.0
3,339,485	-				-0.7
3,339,501	+				-2.4
3,339,507	-				+1.3
3,339,561	-				+0.7
3,339,616	-				+0.5
3,339,616	-				+0.1
3,339,898	+		PS417_15230	0.18	-0.3
3,339,914	-		PS417_15230	0.19	-0.9
3,340,323	+		PS417_15230	0.46	-0.6
3,340,333	+		PS417_15230	0.47	-0.2
3,340,333	+		PS417_15230	0.47	-0.2
3,340,333	+				+1.4
3,340,334	-		PS417_15230	0.47	-1.5
3,340,469	-		PS417_15230	0.55	+0.0
3,340,507	+		PS417_15230	0.58	-0.8
3,340,507	+		PS417_15230	0.58	-1.2
3,340,508	-		PS417_15230	0.58	+0.5
3,340,726	+		PS417_15230	0.72	+0.8
3,340,727	-		PS417_15230	0.72	-0.2
3,340,727	-		PS417_15230	0.72	-2.1
3,340,727	-		PS417_15230	0.72	+0.5
3,340,727	-				-1.4
3,340,834	+		PS417_15230	0.79	-0.8
3,340,834	+		PS417_15230	0.79	+0.7
3,340,835	-		PS417_15230	0.79	-1.6
3,340,913	-		PS417_15230	0.84	+0.1
3,340,979	-				+4.0
3,340,979	-		PS417_15230	0.89	-0.9
3,341,071	+				+2.7
3,341,071	+				+0.1
3,341,071	+				-0.4
3,341,071	+				-0.8
3,341,071	+				+0.5
3,341,071	+				-0.1
3,341,119	-				-2.3
3,341,541	+		PS417_15235	0.44	+0.7
3,341,655	-		PS417_15235	0.57	-2.8
3,341,913	+		PS417_15235	0.86	-0.9
3,341,914	-		PS417_15235	0.86	-0.2
3,341,952	+		PS417_15235	0.90	+0.4
3,342,056	+				+2.0
3,342,056	+				+0.1
3,342,056	+				+0.4
3,342,057	-				+2.2
3,342,057	-				-1.0