Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14545 and PS417_14550 are separated by 58 nucleotides PS417_14550 and PS417_14555 are separated by 121 nucleotides PS417_14555 and PS417_14560 are separated by 184 nucleotides
PS417_14545: PS417_14545 - amino acid transporter, at 3,179,129 to 3,180,526
_14545
PS417_14550: PS417_14550 - acetylpolyamine aminohydrolase, at 3,180,585 to 3,181,619
_14550
PS417_14555: PS417_14555 - AsnC family transcriptional regulator, at 3,181,741 to 3,182,232
_14555
PS417_14560: PS417_14560 - TonB-dependent receptor, at 3,182,417 to 3,184,570
_14560
Position (kb)
3180
3181
3182 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3179.943 kb on - strand, within PS417_14545 at 3180.089 kb on + strand, within PS417_14545 at 3180.089 kb on + strand, within PS417_14545 at 3180.089 kb on + strand, within PS417_14545 at 3180.261 kb on + strand at 3180.363 kb on + strand, within PS417_14545 at 3180.363 kb on + strand, within PS417_14545 at 3180.363 kb on + strand, within PS417_14545 at 3180.363 kb on + strand, within PS417_14545 at 3180.364 kb on - strand, within PS417_14545 at 3180.502 kb on - strand at 3180.616 kb on - strand at 3180.616 kb on - strand at 3180.616 kb on - strand at 3180.652 kb on + strand at 3180.880 kb on + strand, within PS417_14550 at 3180.940 kb on + strand, within PS417_14550 at 3180.946 kb on + strand, within PS417_14550 at 3181.111 kb on + strand at 3181.130 kb on - strand, within PS417_14550 at 3181.423 kb on + strand, within PS417_14550 at 3181.424 kb on - strand, within PS417_14550 at 3181.447 kb on + strand, within PS417_14550 at 3181.819 kb on - strand, within PS417_14555 at 3181.915 kb on + strand, within PS417_14555 at 3182.113 kb on + strand, within PS417_14555 at 3182.113 kb on + strand, within PS417_14555 at 3182.114 kb on - strand at 3182.114 kb on - strand, within PS417_14555 at 3182.557 kb on + strand at 3182.559 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 3,179,943 - PS417_14545 0.58 -1.2 3,180,089 + PS417_14545 0.69 +0.4 3,180,089 + PS417_14545 0.69 -0.7 3,180,089 + PS417_14545 0.69 -0.0 3,180,261 + +0.7 3,180,363 + PS417_14545 0.88 -0.1 3,180,363 + PS417_14545 0.88 -0.0 3,180,363 + PS417_14545 0.88 +1.4 3,180,363 + PS417_14545 0.88 +1.4 3,180,364 - PS417_14545 0.88 -2.3 3,180,502 - -1.0 3,180,616 - -1.2 3,180,616 - -0.2 3,180,616 - +0.2 3,180,652 + +2.4 3,180,880 + PS417_14550 0.29 +1.2 3,180,940 + PS417_14550 0.34 -0.3 3,180,946 + PS417_14550 0.35 +1.4 3,181,111 + +2.0 3,181,130 - PS417_14550 0.53 -0.6 3,181,423 + PS417_14550 0.81 +1.0 3,181,424 - PS417_14550 0.81 +1.8 3,181,447 + PS417_14550 0.83 +0.0 3,181,819 - PS417_14555 0.16 +2.4 3,181,915 + PS417_14555 0.35 -0.7 3,182,113 + PS417_14555 0.76 -0.4 3,182,113 + PS417_14555 0.76 -0.0 3,182,114 - +2.0 3,182,114 - PS417_14555 0.76 -0.0 3,182,557 + -0.7 3,182,559 - -0.9
Or see this region's nucleotide sequence