Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01405 and PS417_01410 overlap by 23 nucleotides PS417_01410 and PS417_01415 overlap by 11 nucleotides PS417_01415 and PS417_01420 are separated by 0 nucleotides
PS417_01405: PS417_01405 - sugar transporter, at 310,332 to 311,699
_01405
PS417_01410: PS417_01410 - transporter, at 311,677 to 312,672
_01410
PS417_01415: PS417_01415 - glycosyl transferase family 1, at 312,662 to 314,176
_01415
PS417_01420: PS417_01420 - histidine kinase, at 314,177 to 315,547
_01420
Position (kb) 312
313
314
315 Strain fitness (log2 ratio) -1
0
1
2
3 at 311.950 kb on + strand, within PS417_01410 at 311.951 kb on - strand, within PS417_01410 at 311.951 kb on - strand, within PS417_01410 at 311.951 kb on - strand, within PS417_01410 at 312.323 kb on - strand, within PS417_01410 at 312.577 kb on + strand at 312.671 kb on - strand at 312.725 kb on + strand at 312.726 kb on - strand at 312.741 kb on + strand at 312.741 kb on + strand at 312.824 kb on + strand, within PS417_01415 at 312.825 kb on - strand, within PS417_01415 at 312.827 kb on - strand, within PS417_01415 at 312.827 kb on - strand, within PS417_01415 at 312.827 kb on - strand, within PS417_01415 at 313.033 kb on + strand, within PS417_01415 at 313.034 kb on - strand, within PS417_01415 at 313.050 kb on + strand, within PS417_01415 at 313.092 kb on - strand, within PS417_01415 at 313.128 kb on - strand, within PS417_01415 at 313.277 kb on + strand, within PS417_01415 at 313.278 kb on - strand, within PS417_01415 at 313.278 kb on - strand, within PS417_01415 at 313.297 kb on + strand, within PS417_01415 at 313.298 kb on - strand, within PS417_01415 at 313.298 kb on - strand, within PS417_01415 at 313.301 kb on + strand, within PS417_01415 at 313.397 kb on + strand, within PS417_01415 at 313.421 kb on + strand, within PS417_01415 at 313.422 kb on - strand, within PS417_01415 at 313.448 kb on + strand, within PS417_01415 at 313.449 kb on - strand, within PS417_01415 at 313.478 kb on + strand, within PS417_01415 at 313.478 kb on + strand, within PS417_01415 at 313.478 kb on + strand, within PS417_01415 at 314.111 kb on + strand at 314.112 kb on - strand at 314.112 kb on - strand at 314.112 kb on - strand at 314.112 kb on - strand at 314.225 kb on + strand at 314.226 kb on - strand at 314.246 kb on + strand at 314.247 kb on - strand at 314.247 kb on - strand at 314.247 kb on - strand at 314.247 kb on - strand at 314.247 kb on - strand at 314.247 kb on - strand at 314.252 kb on + strand at 314.252 kb on + strand at 314.252 kb on + strand at 314.253 kb on - strand at 314.378 kb on + strand, within PS417_01420 at 314.379 kb on - strand, within PS417_01420 at 314.465 kb on + strand, within PS417_01420 at 314.466 kb on - strand, within PS417_01420 at 314.687 kb on + strand, within PS417_01420 at 314.711 kb on + strand, within PS417_01420 at 314.786 kb on + strand, within PS417_01420 at 314.786 kb on + strand, within PS417_01420 at 314.787 kb on - strand, within PS417_01420 at 314.787 kb on - strand, within PS417_01420 at 314.787 kb on - strand, within PS417_01420 at 314.859 kb on + strand, within PS417_01420 at 314.859 kb on + strand, within PS417_01420 at 314.859 kb on + strand, within PS417_01420 at 314.860 kb on - strand, within PS417_01420 at 314.892 kb on - strand, within PS417_01420
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 311,950 + PS417_01410 0.27 -1.6 311,951 - PS417_01410 0.28 +2.0 311,951 - PS417_01410 0.28 +3.0 311,951 - PS417_01410 0.28 +2.3 312,323 - PS417_01410 0.65 +2.4 312,577 + +3.0 312,671 - +2.0 312,725 + +2.1 312,726 - +1.2 312,741 + +2.2 312,741 + +2.4 312,824 + PS417_01415 0.11 +1.9 312,825 - PS417_01415 0.11 +2.5 312,827 - PS417_01415 0.11 +2.1 312,827 - PS417_01415 0.11 +2.3 312,827 - PS417_01415 0.11 +2.6 313,033 + PS417_01415 0.24 +1.8 313,034 - PS417_01415 0.25 +2.1 313,050 + PS417_01415 0.26 +2.6 313,092 - PS417_01415 0.28 +2.1 313,128 - PS417_01415 0.31 +2.5 313,277 + PS417_01415 0.41 +2.1 313,278 - PS417_01415 0.41 +3.0 313,278 - PS417_01415 0.41 +2.0 313,297 + PS417_01415 0.42 +2.1 313,298 - PS417_01415 0.42 +2.0 313,298 - PS417_01415 0.42 +2.3 313,301 + PS417_01415 0.42 +2.9 313,397 + PS417_01415 0.49 +1.0 313,421 + PS417_01415 0.50 +2.3 313,422 - PS417_01415 0.50 +3.1 313,448 + PS417_01415 0.52 +2.2 313,449 - PS417_01415 0.52 +1.9 313,478 + PS417_01415 0.54 +2.7 313,478 + PS417_01415 0.54 +2.2 313,478 + PS417_01415 0.54 +1.8 314,111 + +2.4 314,112 - +2.3 314,112 - +2.2 314,112 - +1.9 314,112 - +2.3 314,225 + +2.8 314,226 - +2.7 314,246 + +2.0 314,247 - +2.4 314,247 - +2.4 314,247 - +2.0 314,247 - +2.2 314,247 - +2.3 314,247 - +2.7 314,252 + +2.3 314,252 + +2.3 314,252 + +2.5 314,253 - +2.0 314,378 + PS417_01420 0.15 +1.5 314,379 - PS417_01420 0.15 +2.6 314,465 + PS417_01420 0.21 +1.8 314,466 - PS417_01420 0.21 +1.9 314,687 + PS417_01420 0.37 +2.7 314,711 + PS417_01420 0.39 +1.9 314,786 + PS417_01420 0.44 +2.4 314,786 + PS417_01420 0.44 +2.5 314,787 - PS417_01420 0.44 +2.3 314,787 - PS417_01420 0.44 +2.5 314,787 - PS417_01420 0.44 +2.7 314,859 + PS417_01420 0.50 +0.9 314,859 + PS417_01420 0.50 +2.6 314,859 + PS417_01420 0.50 +1.1 314,860 - PS417_01420 0.50 +2.3 314,892 - PS417_01420 0.52 +2.7
Or see this region's nucleotide sequence