Strain Fitness in Pseudomonas simiae WCS417 around PS417_00140

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00135 and PS417_00140 are separated by 15 nucleotidesPS417_00140 and PS417_00145 are separated by 103 nucleotides PS417_00135: PS417_00135 - glycine/betaine ABC transporter substrate-binding protein, at 29,021 to 29,935 _00135 PS417_00140: PS417_00140 - choline-sulfatase, at 29,951 to 31,465 _00140 PS417_00145: PS417_00145 - LysR family transcriptional regulator, at 31,569 to 32,519 _00145 Position (kb) 29 30 31 32Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 29.001 kb on + strandat 29.001 kb on + strandat 29.002 kb on - strandat 29.002 kb on - strandat 29.002 kb on - strandat 29.015 kb on + strandat 29.015 kb on + strandat 29.036 kb on + strandat 29.090 kb on - strandat 29.263 kb on + strandat 29.264 kb on - strand, within PS417_00135at 29.265 kb on + strand, within PS417_00135at 29.266 kb on - strand, within PS417_00135at 29.486 kb on - strand, within PS417_00135at 29.514 kb on + strand, within PS417_00135at 29.542 kb on - strand, within PS417_00135at 29.583 kb on - strand, within PS417_00135at 29.583 kb on - strand, within PS417_00135at 29.583 kb on - strand, within PS417_00135at 29.586 kb on + strand, within PS417_00135at 29.671 kb on - strand, within PS417_00135at 29.671 kb on - strand, within PS417_00135at 29.779 kb on - strand, within PS417_00135at 29.855 kb on + strandat 29.925 kb on - strandat 29.952 kb on + strandat 30.010 kb on + strandat 30.024 kb on + strandat 30.024 kb on + strandat 30.025 kb on - strandat 30.025 kb on - strandat 30.025 kb on - strandat 30.245 kb on + strand, within PS417_00140at 30.245 kb on + strand, within PS417_00140at 30.246 kb on - strand, within PS417_00140at 30.246 kb on - strand, within PS417_00140at 30.246 kb on - strand, within PS417_00140at 30.280 kb on - strand, within PS417_00140at 30.280 kb on - strand, within PS417_00140at 30.342 kb on + strand, within PS417_00140at 30.342 kb on + strand, within PS417_00140at 30.342 kb on + strand, within PS417_00140at 30.343 kb on - strand, within PS417_00140at 30.343 kb on - strand, within PS417_00140at 30.343 kb on - strand, within PS417_00140at 30.343 kb on - strand, within PS417_00140at 30.343 kb on - strand, within PS417_00140at 30.353 kb on + strand, within PS417_00140at 30.353 kb on + strand, within PS417_00140at 30.354 kb on - strand, within PS417_00140at 30.687 kb on + strand, within PS417_00140at 30.687 kb on + strand, within PS417_00140at 30.705 kb on + strand, within PS417_00140at 30.706 kb on - strand, within PS417_00140at 30.706 kb on - strand, within PS417_00140at 30.763 kb on - strand, within PS417_00140at 30.817 kb on + strand, within PS417_00140at 30.817 kb on + strandat 30.827 kb on + strand, within PS417_00140at 30.827 kb on + strand, within PS417_00140at 30.827 kb on + strand, within PS417_00140at 30.827 kb on + strand, within PS417_00140at 30.828 kb on - strand, within PS417_00140at 30.828 kb on - strand, within PS417_00140at 30.828 kb on - strand, within PS417_00140at 30.874 kb on - strand, within PS417_00140at 30.952 kb on - strand, within PS417_00140at 30.952 kb on - strand, within PS417_00140at 30.952 kb on - strand, within PS417_00140at 31.105 kb on - strand, within PS417_00140at 31.206 kb on + strand, within PS417_00140at 31.206 kb on + strand, within PS417_00140at 31.215 kb on + strand, within PS417_00140at 31.215 kb on + strand, within PS417_00140at 31.215 kb on + strand, within PS417_00140at 31.216 kb on - strand, within PS417_00140at 31.216 kb on - strand, within PS417_00140at 31.216 kb on - strand, within PS417_00140at 31.216 kb on - strand, within PS417_00140at 31.329 kb on + strandat 31.401 kb on + strandat 31.402 kb on - strandat 31.925 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.949 kb on - strand, within PS417_00145at 31.949 kb on - strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.257 kb on - strand, within PS417_00145at 32.257 kb on - strand, within PS417_00145at 32.391 kb on + strand, within PS417_00145at 32.391 kb on + strand, within PS417_00145at 32.391 kb on + strand, within PS417_00145at 32.392 kb on - strand, within PS417_00145

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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29,001 + +2.5
29,001 + -1.6
29,002 - -2.0
29,002 - -0.0
29,002 - +0.5
29,015 + -1.4
29,015 + -0.7
29,036 + +1.2
29,090 - +5.6
29,263 + -1.0
29,264 - PS417_00135 0.27 -0.8
29,265 + PS417_00135 0.27 -0.0
29,266 - PS417_00135 0.27 -0.2
29,486 - PS417_00135 0.51 -1.5
29,514 + PS417_00135 0.54 -1.0
29,542 - PS417_00135 0.57 +0.7
29,583 - PS417_00135 0.61 +1.8
29,583 - PS417_00135 0.61 -0.5
29,583 - PS417_00135 0.61 -0.0
29,586 + PS417_00135 0.62 -0.6
29,671 - PS417_00135 0.71 +0.9
29,671 - PS417_00135 0.71 -1.1
29,779 - PS417_00135 0.83 -2.3
29,855 + -0.0
29,925 - -2.2
29,952 + -0.9
30,010 + +0.1
30,024 + +0.5
30,024 + -0.5
30,025 - +1.0
30,025 - -0.9
30,025 - +0.0
30,245 + PS417_00140 0.19 -1.0
30,245 + PS417_00140 0.19 +1.3
30,246 - PS417_00140 0.19 +1.2
30,246 - PS417_00140 0.19 -0.5
30,246 - PS417_00140 0.19 +1.5
30,280 - PS417_00140 0.22 +0.4
30,280 - PS417_00140 0.22 -0.4
30,342 + PS417_00140 0.26 +0.2
30,342 + PS417_00140 0.26 -0.7
30,342 + PS417_00140 0.26 -1.2
30,343 - PS417_00140 0.26 -0.2
30,343 - PS417_00140 0.26 +0.1
30,343 - PS417_00140 0.26 +2.0
30,343 - PS417_00140 0.26 +0.4
30,343 - PS417_00140 0.26 -1.0
30,353 + PS417_00140 0.27 +0.5
30,353 + PS417_00140 0.27 +0.5
30,354 - PS417_00140 0.27 -0.2
30,687 + PS417_00140 0.49 -0.7
30,687 + PS417_00140 0.49 -0.6
30,705 + PS417_00140 0.50 -0.0
30,706 - PS417_00140 0.50 -0.6
30,706 - PS417_00140 0.50 -0.5
30,763 - PS417_00140 0.54 +1.1
30,817 + PS417_00140 0.57 +0.1
30,817 + +0.5
30,827 + PS417_00140 0.58 -0.5
30,827 + PS417_00140 0.58 -0.3
30,827 + PS417_00140 0.58 +0.3
30,827 + PS417_00140 0.58 -2.2
30,828 - PS417_00140 0.58 +1.7
30,828 - PS417_00140 0.58 +0.2
30,828 - PS417_00140 0.58 -0.3
30,874 - PS417_00140 0.61 -0.0
30,952 - PS417_00140 0.66 +0.2
30,952 - PS417_00140 0.66 -1.6
30,952 - PS417_00140 0.66 -0.9
31,105 - PS417_00140 0.76 +0.8
31,206 + PS417_00140 0.83 -0.8
31,206 + PS417_00140 0.83 -0.6
31,215 + PS417_00140 0.83 +1.0
31,215 + PS417_00140 0.83 -0.6
31,215 + PS417_00140 0.83 -0.8
31,216 - PS417_00140 0.83 -0.2
31,216 - PS417_00140 0.83 -0.3
31,216 - PS417_00140 0.83 +0.8
31,216 - PS417_00140 0.83 -0.3
31,329 + +0.3
31,401 + -1.3
31,402 - -2.4
31,925 + PS417_00145 0.37 -0.6
31,948 + PS417_00145 0.40 +0.0
31,948 + PS417_00145 0.40 -1.2
31,948 + PS417_00145 0.40 +0.2
31,948 + PS417_00145 0.40 -1.1
31,948 + PS417_00145 0.40 -1.4
31,948 + PS417_00145 0.40 -1.1
31,948 + PS417_00145 0.40 +1.9
31,949 - PS417_00145 0.40 -0.8
31,949 - PS417_00145 0.40 +0.8
32,256 + PS417_00145 0.72 +0.4
32,256 + PS417_00145 0.72 +0.6
32,256 + PS417_00145 0.72 -0.5
32,256 + PS417_00145 0.72 +0.2
32,256 + PS417_00145 0.72 -0.8
32,257 - PS417_00145 0.72 -0.4
32,257 - PS417_00145 0.72 -0.3
32,391 + PS417_00145 0.86 +1.9
32,391 + PS417_00145 0.86 -0.2
32,391 + PS417_00145 0.86 -0.2
32,392 - PS417_00145 0.87 -1.6

Or see this region's nucleotide sequence