Strain Fitness in Pseudomonas simiae WCS417 around PS417_12935

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
2,827,795	-				+0.2
2,827,863	-				+1.0
2,827,909	+		PS417_12930	0.10	-0.6
2,827,982	+		PS417_12930	0.22	+0.6
2,827,982	+				+0.4
2,827,982	+		PS417_12930	0.22	+2.0
2,827,983	+		PS417_12930	0.22	-0.4
2,827,983	-		PS417_12930	0.22	-0.4
2,827,983	-		PS417_12930	0.22	-2.0
2,828,224	+		PS417_12930	0.60	-1.4
2,828,465	+				+0.5
2,828,466	-				-1.5
2,828,466	-				+0.8
2,828,537	+				+0.6
2,828,606	-				-1.2
2,828,631	+				-1.2
2,828,669	+				+1.0
2,828,669	+				+0.4
2,828,780	-				-0.2
2,828,780	-				-1.8
2,828,964	+		PS417_12935	0.38	-0.8
2,829,031	-		PS417_12935	0.51	+1.9
2,829,031	-		PS417_12935	0.51	+0.6
2,829,240	+				-2.8
2,829,240	+				-0.1
2,829,240	+				+0.4
2,829,240	+				-0.1
2,829,242	+				-1.0
2,829,242	+				+0.5
2,829,243	-				-0.3
2,829,255	+				-0.6
2,829,804	+		PS417_12940	0.56	-0.1
2,829,951	+		PS417_12940	0.72	+0.1
2,829,951	+		PS417_12940	0.72	-0.6
2,830,048	-		PS417_12940	0.83	-1.5
2,830,048	-		PS417_12940	0.83	-0.3
2,830,170	-				-0.5
2,830,250	+				+0.7