Strain Fitness in Pseudomonas simiae WCS417 around PS417_01250

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01245 and PS417_01250 are separated by 284 nucleotidesPS417_01250 and PS417_01255 are separated by 22 nucleotidesPS417_01255 and PS417_01260 are separated by 25 nucleotides PS417_01245: PS417_01245 - hypothetical protein, at 270,041 to 271,216 _01245 PS417_01250: PS417_01250 - ATP-dependent DNA helicase RecQ, at 271,501 to 273,438 _01250 PS417_01255: PS417_01255 - thioesterase, at 273,461 to 273,892 _01255 PS417_01260: PS417_01260 - hypothetical protein, at 273,918 to 274,397 _01260 Position (kb) 271 272 273 274Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 270.536 kb on + strand, within PS417_01245at 270.548 kb on + strand, within PS417_01245at 270.548 kb on + strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.555 kb on - strand, within PS417_01245at 270.555 kb on - strand, within PS417_01245at 270.633 kb on - strand, within PS417_01245at 270.633 kb on - strand, within PS417_01245at 270.633 kb on - strand, within PS417_01245at 270.633 kb on - strand, within PS417_01245at 270.655 kb on + strand, within PS417_01245at 270.659 kb on + strand, within PS417_01245at 270.659 kb on + strand, within PS417_01245at 270.662 kb on + strand, within PS417_01245at 270.662 kb on + strand, within PS417_01245at 270.662 kb on + strand, within PS417_01245at 270.843 kb on + strand, within PS417_01245at 270.844 kb on - strand, within PS417_01245at 270.986 kb on + strand, within PS417_01245at 271.085 kb on + strand, within PS417_01245at 271.085 kb on + strand, within PS417_01245at 271.085 kb on + strand, within PS417_01245at 271.088 kb on + strand, within PS417_01245at 271.088 kb on + strand, within PS417_01245at 271.089 kb on - strand, within PS417_01245at 271.106 kb on + strandat 271.107 kb on - strandat 271.225 kb on + strandat 271.225 kb on + strandat 271.225 kb on + strandat 271.226 kb on - strandat 271.283 kb on + strandat 271.283 kb on + strandat 271.284 kb on - strandat 271.284 kb on - strandat 271.284 kb on - strandat 271.284 kb on - strandat 271.284 kb on - strandat 271.347 kb on + strandat 271.348 kb on - strandat 271.348 kb on - strandat 271.348 kb on - strandat 271.348 kb on - strandat 271.402 kb on + strandat 271.402 kb on + strandat 271.402 kb on + strandat 271.402 kb on + strandat 271.402 kb on + strandat 271.403 kb on - strandat 271.403 kb on - strandat 271.403 kb on - strandat 271.403 kb on - strandat 271.460 kb on - strandat 271.474 kb on - strandat 271.633 kb on + strandat 271.731 kb on + strand, within PS417_01250at 271.731 kb on + strand, within PS417_01250at 271.747 kb on - strand, within PS417_01250at 271.915 kb on - strand, within PS417_01250at 271.967 kb on - strand, within PS417_01250at 272.089 kb on + strand, within PS417_01250at 272.428 kb on + strand, within PS417_01250at 272.428 kb on + strand, within PS417_01250at 272.428 kb on + strand, within PS417_01250at 272.428 kb on + strand, within PS417_01250at 272.717 kb on - strand, within PS417_01250at 272.737 kb on + strand, within PS417_01250at 272.738 kb on - strand, within PS417_01250at 272.909 kb on - strand, within PS417_01250at 272.963 kb on - strand, within PS417_01250at 272.997 kb on - strand, within PS417_01250at 273.011 kb on + strand, within PS417_01250at 273.013 kb on + strand, within PS417_01250at 273.014 kb on - strand, within PS417_01250at 273.014 kb on - strand, within PS417_01250at 273.014 kb on - strand, within PS417_01250at 273.116 kb on - strand, within PS417_01250at 273.219 kb on + strand, within PS417_01250at 273.250 kb on - strandat 273.391 kb on + strandat 273.391 kb on + strandat 273.496 kb on - strandat 273.539 kb on + strand, within PS417_01255at 273.539 kb on + strand, within PS417_01255at 273.539 kb on + strand, within PS417_01255at 273.540 kb on - strand, within PS417_01255at 273.540 kb on - strand, within PS417_01255at 273.563 kb on + strand, within PS417_01255at 273.564 kb on - strand, within PS417_01255at 273.564 kb on - strand, within PS417_01255at 273.564 kb on - strand, within PS417_01255at 273.566 kb on + strand, within PS417_01255at 273.567 kb on - strand, within PS417_01255at 273.593 kb on - strand, within PS417_01255at 273.593 kb on - strand, within PS417_01255at 273.593 kb on - strand, within PS417_01255at 273.593 kb on - strand, within PS417_01255at 273.593 kb on - strand, within PS417_01255at 273.596 kb on + strand, within PS417_01255at 273.597 kb on - strand, within PS417_01255at 273.597 kb on - strand, within PS417_01255at 273.671 kb on + strand, within PS417_01255at 273.672 kb on - strand, within PS417_01255at 273.737 kb on - strand, within PS417_01255at 273.737 kb on - strand, within PS417_01255at 273.737 kb on - strand, within PS417_01255at 273.737 kb on - strand, within PS417_01255at 273.737 kb on - strand, within PS417_01255at 273.750 kb on - strand, within PS417_01255at 273.905 kb on - strandat 273.905 kb on - strandat 273.958 kb on + strandat 273.995 kb on - strand, within PS417_01260at 274.054 kb on + strand, within PS417_01260at 274.054 kb on + strand, within PS417_01260at 274.054 kb on + strand, within PS417_01260at 274.054 kb on + strandat 274.055 kb on - strand, within PS417_01260at 274.055 kb on - strand, within PS417_01260at 274.055 kb on - strand, within PS417_01260at 274.055 kb on - strand, within PS417_01260at 274.055 kb on - strand, within PS417_01260at 274.059 kb on - strand, within PS417_01260at 274.135 kb on - strand, within PS417_01260at 274.290 kb on + strand, within PS417_01260at 274.291 kb on - strand, within PS417_01260at 274.291 kb on - strand, within PS417_01260at 274.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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270,536 + PS417_01245 0.42 +0.5
270,548 + PS417_01245 0.43 +0.1
270,548 + PS417_01245 0.43 +3.2
270,549 - PS417_01245 0.43 -1.0
270,549 - PS417_01245 0.43 -1.3
270,549 - PS417_01245 0.43 -0.3
270,549 - PS417_01245 0.43 -0.8
270,549 - PS417_01245 0.43 +3.9
270,555 - PS417_01245 0.44 +0.2
270,555 - PS417_01245 0.44 -0.4
270,633 - PS417_01245 0.50 +0.3
270,633 - PS417_01245 0.50 -0.8
270,633 - PS417_01245 0.50 -1.5
270,633 - PS417_01245 0.50 +0.5
270,655 + PS417_01245 0.52 -0.0
270,659 + PS417_01245 0.53 -1.4
270,659 + PS417_01245 0.53 +0.5
270,662 + PS417_01245 0.53 +1.5
270,662 + PS417_01245 0.53 +0.8
270,662 + PS417_01245 0.53 +1.2
270,843 + PS417_01245 0.68 -2.2
270,844 - PS417_01245 0.68 -0.3
270,986 + PS417_01245 0.80 -1.7
271,085 + PS417_01245 0.89 +0.2
271,085 + PS417_01245 0.89 +0.6
271,085 + PS417_01245 0.89 +1.8
271,088 + PS417_01245 0.89 +0.8
271,088 + PS417_01245 0.89 +0.2
271,089 - PS417_01245 0.89 +0.9
271,106 + -0.2
271,107 - +2.4
271,225 + -0.4
271,225 + -1.7
271,225 + -0.1
271,226 - +0.8
271,283 + +0.4
271,283 + +0.0
271,284 - +0.7
271,284 - +0.6
271,284 - -2.4
271,284 - +1.8
271,284 - +0.5
271,347 + +0.5
271,348 - -0.5
271,348 - -1.3
271,348 - -0.0
271,348 - +0.2
271,402 + -2.1
271,402 + -0.1
271,402 + +0.1
271,402 + -1.3
271,402 + +0.3
271,403 - +1.5
271,403 - -0.5
271,403 - +0.5
271,403 - +0.0
271,460 - -0.5
271,474 - +0.8
271,633 + -2.5
271,731 + PS417_01250 0.12 -2.4
271,731 + PS417_01250 0.12 -1.0
271,747 - PS417_01250 0.13 -1.1
271,915 - PS417_01250 0.21 -1.6
271,967 - PS417_01250 0.24 -0.6
272,089 + PS417_01250 0.30 -0.8
272,428 + PS417_01250 0.48 -0.7
272,428 + PS417_01250 0.48 +0.2
272,428 + PS417_01250 0.48 -0.5
272,428 + PS417_01250 0.48 -0.4
272,717 - PS417_01250 0.63 -0.8
272,737 + PS417_01250 0.64 -0.6
272,738 - PS417_01250 0.64 -2.5
272,909 - PS417_01250 0.73 +0.1
272,963 - PS417_01250 0.75 -0.0
272,997 - PS417_01250 0.77 +0.8
273,011 + PS417_01250 0.78 -0.3
273,013 + PS417_01250 0.78 -0.0
273,014 - PS417_01250 0.78 -0.1
273,014 - PS417_01250 0.78 -2.2
273,014 - PS417_01250 0.78 +0.3
273,116 - PS417_01250 0.83 +1.1
273,219 + PS417_01250 0.89 +0.2
273,250 - -1.4
273,391 + -0.8
273,391 + -0.8
273,496 - -1.1
273,539 + PS417_01255 0.18 -0.1
273,539 + PS417_01255 0.18 +1.2
273,539 + PS417_01255 0.18 +0.0
273,540 - PS417_01255 0.18 -2.4
273,540 - PS417_01255 0.18 +1.3
273,563 + PS417_01255 0.24 -0.7
273,564 - PS417_01255 0.24 -0.3
273,564 - PS417_01255 0.24 -1.5
273,564 - PS417_01255 0.24 +1.2
273,566 + PS417_01255 0.24 +0.1
273,567 - PS417_01255 0.25 +1.2
273,593 - PS417_01255 0.31 -1.3
273,593 - PS417_01255 0.31 -1.3
273,593 - PS417_01255 0.31 +0.1
273,593 - PS417_01255 0.31 -0.7
273,593 - PS417_01255 0.31 -1.5
273,596 + PS417_01255 0.31 -0.5
273,597 - PS417_01255 0.31 -1.1
273,597 - PS417_01255 0.31 +0.1
273,671 + PS417_01255 0.49 +0.7
273,672 - PS417_01255 0.49 +0.1
273,737 - PS417_01255 0.64 -3.4
273,737 - PS417_01255 0.64 +0.6
273,737 - PS417_01255 0.64 -0.2
273,737 - PS417_01255 0.64 +0.8
273,737 - PS417_01255 0.64 +0.2
273,750 - PS417_01255 0.67 +2.5
273,905 - +0.2
273,905 - -1.3
273,958 + +1.4
273,995 - PS417_01260 0.16 +3.3
274,054 + PS417_01260 0.28 -1.8
274,054 + PS417_01260 0.28 -0.7
274,054 + PS417_01260 0.28 -3.3
274,054 + -0.8
274,055 - PS417_01260 0.29 -1.1
274,055 - PS417_01260 0.29 +1.4
274,055 - PS417_01260 0.29 -1.5
274,055 - PS417_01260 0.29 -2.5
274,055 - PS417_01260 0.29 +1.0
274,059 - PS417_01260 0.29 -1.1
274,135 - PS417_01260 0.45 -0.5
274,290 + PS417_01260 0.78 -0.6
274,291 - PS417_01260 0.78 +0.1
274,291 - PS417_01260 0.78 -0.9
274,399 - -0.1

Or see this region's nucleotide sequence