Strain Fitness in Pseudomonas simiae WCS417 around PS417_10340

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
2,209,057	-				-0.8
2,209,147	-				+1.0
2,209,200	+				-1.1
2,209,200	+				-0.6
2,209,200	+				+0.3
2,209,201	-				+0.2
2,209,204	+				-1.6
2,209,204	+				-0.9
2,209,205	-				+0.3
2,209,205	-				+3.0
2,209,307	+				-0.0
2,209,308	-				+1.3
2,209,355	+				-1.6
2,209,356	-				-0.6
2,209,356	-				-0.5
2,209,356	-				-0.5
2,209,607	+		PS417_10335	0.65	+0.9
2,209,608	-		PS417_10335	0.66	-2.3
2,209,754	+				+0.1
2,209,754	+				-1.2
2,209,783	+				-0.6
2,209,784	-				-2.0
2,209,784	-				-0.1
2,209,827	-				-0.3
2,210,159	+		PS417_10340	0.27	-1.0
2,210,160	-		PS417_10340	0.27	-1.4
2,210,434	-		PS417_10340	0.55	+0.4
2,210,454	-		PS417_10340	0.57	+0.1
2,210,480	-		PS417_10340	0.60	-1.2
2,210,531	+		PS417_10340	0.65	+0.9
2,210,583	-		PS417_10340	0.70	-0.7
2,210,639	-		PS417_10340	0.76	-0.8
2,211,035	+		PS417_10345	0.15	-0.2
2,211,094	+		PS417_10345	0.20	+1.5
2,211,246	+		PS417_10345	0.32	-1.5
2,211,246	+		PS417_10345	0.32	-0.2
2,211,355	+		PS417_10345	0.41	-1.4
2,211,647	+		PS417_10345	0.65	+0.4
2,211,682	-		PS417_10345	0.68	-0.6
2,211,682	-		PS417_10345	0.68	+0.4
2,211,716	+		PS417_10345	0.71	+0.0
2,211,716	+		PS417_10345	0.71	+0.5