Strain Fitness in Pseudomonas simiae WCS417 around PS417_10130

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
2,168,760	-		PS417_10120	0.25	-0.5
2,168,857	+		PS417_10120	0.52	+0.1
2,168,858	-		PS417_10120	0.52	+0.4
2,168,858	-		PS417_10120	0.52	-1.3
2,169,303	+		PS417_10125	0.46	+0.6
2,169,490	+		PS417_10125	0.77	-0.1
2,169,491	-				-0.9
2,169,501	+		PS417_10125	0.79	-1.9
2,169,502	-		PS417_10125	0.79	+1.5
2,169,502	-		PS417_10125	0.79	+0.1
2,169,623	+				+1.4
2,169,624	-				+0.7
2,169,624	-				+3.0
2,169,624	-				+0.7
2,169,652	-				-0.0
2,169,748	-		PS417_10130	0.30	-0.6
2,169,912	+		PS417_10130	0.69	+1.4
2,169,913	-		PS417_10130	0.69	-1.0
2,169,996	+		PS417_10130	0.89	-1.1
2,169,996	+		PS417_10130	0.89	+1.4
2,169,996	+		PS417_10130	0.89	-1.7
2,169,997	-		PS417_10130	0.89	-2.5
2,169,998	+		PS417_10130	0.90	+0.4
2,169,999	-				-0.9
2,169,999	-				-0.8
2,170,108	+				-0.1
2,170,108	+				+1.7
2,170,109	-				-0.1
2,170,157	+				+0.0
2,170,158	-				-1.6
2,170,161	+				-0.9
2,170,461	+		PS417_10135	0.53	-2.2
2,170,462	-		PS417_10135	0.53	+0.0
2,170,768	-				+0.3