Strain Fitness in Pseudomonas simiae WCS417 around PS417_09955

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
2,146,608	+				-0.4
2,146,608	+				+0.4
2,146,654	+				+1.4
2,146,654	+				+0.9
2,146,655	-				+0.5
2,146,655	-				-0.9
2,146,748	+				-1.9
2,146,749	-				+1.3
2,146,754	+				-1.1
2,146,755	-				-0.9
2,146,758	-				+0.3
2,146,759	+				-0.4
2,146,759	+				-0.2
2,146,759	+				+0.3
2,146,759	+				-1.8
2,146,759	+				-1.4
2,146,759	+				+0.4
2,146,760	-				-0.2
2,146,760	-				-0.1
2,146,760	-				-0.2
2,146,760	-				+0.6
2,146,760	-				+0.1
2,146,841	-				-0.4
2,146,841	-				-3.9
2,146,853	+				+1.3
2,146,853	+				+4.4
2,146,854	-				+0.2
2,146,857	-				-1.4
2,146,878	+				-0.6
2,146,884	-				+0.5
2,146,950	+				+0.2
2,146,966	-				+2.4
2,146,984	+				+2.6
2,147,014	+				+0.5
2,147,053	-				-0.5
2,147,093	+				+1.2
2,147,093	+				-1.0
2,147,094	-				-0.6
2,147,146	+		PS417_09955	0.12	+0.7
2,147,146	+		PS417_09955	0.12	+1.1
2,147,204	+		PS417_09955	0.38	+1.6
2,147,204	+		PS417_09955	0.38	+0.4
2,147,205	-		PS417_09955	0.39	+0.5
2,147,205	-		PS417_09955	0.39	+1.3
2,147,205	-		PS417_09955	0.39	+0.1
2,147,251	+		PS417_09955	0.60	+2.5
2,147,251	+		PS417_09955	0.60	+1.0
2,147,252	-		PS417_09955	0.60	-1.4
2,147,292	+		PS417_09955	0.79	+1.0
2,147,293	-		PS417_09955	0.79	-0.2
2,147,293	-		PS417_09955	0.79	-1.7
2,147,322	+				+1.9
2,147,338	+				+0.1
2,147,434	-				-2.1
2,147,443	-				-0.9
2,147,476	-				+1.5
2,147,476	-				-0.2
2,147,569	+		PS417_09960	0.17	+2.1
2,147,569	+		PS417_09960	0.17	+0.9
2,147,569	+		PS417_09960	0.17	+1.3
2,147,570	-		PS417_09960	0.17	-0.1
2,147,570	-		PS417_09960	0.17	+0.3
2,147,570	-		PS417_09960	0.17	+1.1
2,147,571	+		PS417_09960	0.18	+0.4
2,147,572	-		PS417_09960	0.18	-1.8
2,147,715	-		PS417_09960	0.62	-1.2
2,147,878	-				-0.9
2,147,954	+				-1.0
2,147,955	-				-0.3
2,147,974	+				-0.7
2,148,101	+		PS417_09965	0.17	-0.0
2,148,101	+		PS417_09965	0.17	+0.2
2,148,101	+		PS417_09965	0.17	-0.1
2,148,101	+		PS417_09965	0.17	+0.2
2,148,102	-		PS417_09965	0.17	+4.0
2,148,110	+		PS417_09965	0.18	-0.5
2,148,110	+		PS417_09965	0.18	-0.4
2,148,110	+				+1.4
2,148,111	-		PS417_09965	0.18	-2.4
2,148,111	-		PS417_09965	0.18	+0.7
2,148,113	-		PS417_09965	0.19	+0.5
2,148,113	-		PS417_09965	0.19	+0.5
2,148,113	-		PS417_09965	0.19	-1.0
2,148,113	-		PS417_09965	0.19	-0.1
2,148,113	-		PS417_09965	0.19	-0.2
2,148,116	+		PS417_09965	0.19	+2.2
2,148,134	+		PS417_09965	0.21	-2.3
2,148,135	-		PS417_09965	0.21	-1.8
2,148,169	-		PS417_09965	0.25	-1.1
2,148,188	-				-1.6
2,148,188	-		PS417_09965	0.27	-0.5
2,148,215	+		PS417_09965	0.30	+0.6