Strain Fitness in Pseudomonas simiae WCS417 around PS417_09905

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
2,140,151	-				+0.0
2,140,224	+		PS417_09895	0.28	-0.5
2,140,224	+		PS417_09895	0.28	+1.6
2,140,465	+				-0.6
2,140,465	+				+0.1
2,140,466	-				+0.3
2,140,531	+				+0.1
2,140,771	+		PS417_09900	0.41	-0.7
2,140,772	-		PS417_09900	0.41	+0.2
2,140,772	-		PS417_09900	0.41	-0.2
2,140,775	+		PS417_09900	0.41	-1.6
2,140,789	+		PS417_09900	0.44	+1.0
2,140,789	+		PS417_09900	0.44	+1.0
2,140,790	-		PS417_09900	0.44	-2.7
2,140,860	+		PS417_09900	0.56	+0.5
2,140,860	+		PS417_09900	0.56	-0.1
2,140,861	-		PS417_09900	0.56	+0.3
2,140,861	-		PS417_09900	0.56	-0.6
2,140,981	+		PS417_09900	0.76	+0.4
2,140,981	+		PS417_09900	0.76	+0.8
2,140,981	+		PS417_09900	0.76	-1.9
2,140,982	-				+2.0
2,141,047	+		PS417_09900	0.87	-0.5
2,141,047	+		PS417_09900	0.87	-1.2
2,141,048	-		PS417_09900	0.87	+1.0
2,141,127	+				+1.4
2,141,128	-				+0.3
2,141,128	-				+0.6
2,141,136	-				+0.6
2,141,235	+				+1.4
2,141,235	+		PS417_09905	0.16	+0.0
2,141,265	+		PS417_09905	0.21	+0.9
2,141,266	-		PS417_09905	0.21	+0.2
2,141,266	-		PS417_09905	0.21	-1.0
2,141,395	+		PS417_09905	0.41	-0.0
2,141,395	+		PS417_09905	0.41	-3.2
2,141,395	+		PS417_09905	0.41	-0.0
2,141,396	-		PS417_09905	0.41	-0.5
2,141,396	-		PS417_09905	0.41	+0.6
2,141,396	-		PS417_09905	0.41	-1.9
2,141,399	+		PS417_09905	0.41	-1.7
2,141,399	+		PS417_09905	0.41	-0.7
2,141,399	+		PS417_09905	0.41	-1.6
2,141,400	-		PS417_09905	0.41	-1.0
2,141,400	-		PS417_09905	0.41	-0.4
2,141,400	-		PS417_09905	0.41	-1.7
2,141,400	-		PS417_09905	0.41	+2.4
2,141,448	-		PS417_09905	0.49	+0.8
2,141,481	+		PS417_09905	0.54	-2.2
2,141,482	-		PS417_09905	0.54	-1.6
2,141,599	+		PS417_09905	0.71	-0.2
2,141,646	+		PS417_09905	0.78	-1.0
2,141,646	+		PS417_09905	0.78	-0.4
2,141,646	+		PS417_09905	0.78	+0.3
2,141,647	-		PS417_09905	0.79	+0.4
2,142,126	-		PS417_09910	0.35	-2.0
2,142,139	+		PS417_09910	0.37	-0.6
2,142,183	-		PS417_09910	0.41	+0.5
2,142,420	-		PS417_09910	0.66	-0.1
2,142,574	-		PS417_09910	0.81	+0.4
2,142,711	-				-0.5
2,142,711	-				+0.8
2,142,738	+				-0.7
2,142,738	+				-0.1
2,142,738	+				-0.1
2,142,738	+				+0.1
2,142,739	-				+3.0
2,142,744	+				+1.1
2,142,744	+				+0.2