Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00930 and PS417_00935 are separated by 158 nucleotides PS417_00935 and PS417_00940 are separated by 13 nucleotides PS417_00940 and PS417_00945 are separated by 3 nucleotides
PS417_00930: PS417_00930 - ABC transporter permease, at 208,404 to 209,414
_00930
PS417_00935: PS417_00935 - sulfate ABC transporter permease, at 209,573 to 210,391
_00935
PS417_00940: PS417_00940 - sulfate ABC transporter permease, at 210,405 to 211,277
_00940
PS417_00945: PS417_00945 - sulfate ABC transporter ATP-binding protein, at 211,281 to 212,261
_00945
Position (kb) 209
210
211 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 208.796 kb on + strand, within PS417_00930 at 208.797 kb on - strand, within PS417_00930 at 208.947 kb on + strand, within PS417_00930 at 208.948 kb on - strand, within PS417_00930 at 209.096 kb on + strand, within PS417_00930 at 209.202 kb on + strand, within PS417_00930 at 209.202 kb on + strand, within PS417_00930 at 209.203 kb on - strand, within PS417_00930 at 209.218 kb on - strand, within PS417_00930 at 209.218 kb on - strand, within PS417_00930 at 209.256 kb on + strand, within PS417_00930 at 209.490 kb on + strand at 209.491 kb on - strand at 209.572 kb on + strand at 209.572 kb on + strand at 209.573 kb on - strand at 209.624 kb on + strand at 209.636 kb on + strand at 209.652 kb on + strand at 209.679 kb on + strand, within PS417_00935 at 209.925 kb on - strand, within PS417_00935 at 209.981 kb on + strand, within PS417_00935 at 209.983 kb on + strand, within PS417_00935 at 210.203 kb on + strand, within PS417_00935 at 210.287 kb on + strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.477 kb on - strand at 210.696 kb on + strand, within PS417_00940 at 210.697 kb on - strand, within PS417_00940 at 210.777 kb on + strand, within PS417_00940 at 210.777 kb on + strand, within PS417_00940 at 211.152 kb on + strand, within PS417_00940 at 211.153 kb on - strand, within PS417_00940 at 211.153 kb on - strand, within PS417_00940 at 211.153 kb on - strand, within PS417_00940 at 211.242 kb on - strand at 211.242 kb on - strand at 211.275 kb on + strand at 211.275 kb on + strand at 211.275 kb on + strand at 211.276 kb on - strand at 211.276 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 208,796 + PS417_00930 0.39 +2.9 208,797 - PS417_00930 0.39 +0.5 208,947 + PS417_00930 0.54 +0.0 208,948 - PS417_00930 0.54 -0.3 209,096 + PS417_00930 0.68 -1.5 209,202 + PS417_00930 0.79 -0.3 209,202 + PS417_00930 0.79 -1.5 209,203 - PS417_00930 0.79 -1.1 209,218 - PS417_00930 0.81 -0.8 209,218 - PS417_00930 0.81 -1.5 209,256 + PS417_00930 0.84 +0.3 209,490 + -1.8 209,491 - -0.4 209,572 + -0.9 209,572 + -1.7 209,573 - -1.0 209,624 + -0.3 209,636 + +2.0 209,652 + -1.4 209,679 + PS417_00935 0.13 -0.7 209,925 - PS417_00935 0.43 -1.2 209,981 + PS417_00935 0.50 -0.1 209,983 + PS417_00935 0.50 -0.6 210,203 + PS417_00935 0.77 -0.5 210,287 + PS417_00935 0.87 +0.6 210,288 - PS417_00935 0.87 -0.6 210,288 - PS417_00935 0.87 -1.3 210,288 - PS417_00935 0.87 -0.3 210,477 - +1.1 210,696 + PS417_00940 0.33 +0.4 210,697 - PS417_00940 0.33 +3.5 210,777 + PS417_00940 0.43 -0.4 210,777 + PS417_00940 0.43 -0.9 211,152 + PS417_00940 0.86 +1.0 211,153 - PS417_00940 0.86 -0.5 211,153 - PS417_00940 0.86 +0.8 211,153 - PS417_00940 0.86 +0.1 211,242 - -0.2 211,242 - +0.6 211,275 + -0.3 211,275 + -0.4 211,275 + +0.5 211,276 - -0.2 211,276 - -1.0
Or see this region's nucleotide sequence