Strain Fitness in Pseudomonas simiae WCS417 around PS417_00790

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00780 and PS417_00785 are separated by 272 nucleotidesPS417_00785 and PS417_00790 are separated by 40 nucleotidesPS417_00790 and PS417_00795 are separated by 41 nucleotidesPS417_00795 and PS417_00800 overlap by 4 nucleotides PS417_00780: PS417_00780 - hypothetical protein, at 174,656 to 175,267 _00780 PS417_00785: PS417_00785 - hypothetical protein, at 175,540 to 176,121 _00785 PS417_00790: PS417_00790 - curli production assembly protein CsgG, at 176,162 to 176,842 _00790 PS417_00795: PS417_00795 - lipoprotein, at 176,884 to 177,246 _00795 PS417_00800: PS417_00800 - lipoprotein, at 177,243 to 177,893 _00800 Position (kb) 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 175.200 kb on + strand, within PS417_00780at 175.201 kb on - strand, within PS417_00780at 175.201 kb on - strand, within PS417_00780at 175.322 kb on - strandat 175.360 kb on - strandat 175.360 kb on - strandat 175.397 kb on + strandat 175.425 kb on + strandat 175.425 kb on + strandat 175.426 kb on - strandat 175.506 kb on + strandat 175.506 kb on + strandat 175.556 kb on + strandat 175.603 kb on + strand, within PS417_00785at 175.603 kb on + strand, within PS417_00785at 175.604 kb on - strand, within PS417_00785at 175.606 kb on + strand, within PS417_00785at 175.606 kb on + strand, within PS417_00785at 175.606 kb on + strand, within PS417_00785at 175.607 kb on - strandat 175.607 kb on - strand, within PS417_00785at 175.607 kb on - strand, within PS417_00785at 175.819 kb on + strand, within PS417_00785at 175.819 kb on + strand, within PS417_00785at 175.820 kb on - strand, within PS417_00785at 175.820 kb on - strand, within PS417_00785at 175.820 kb on - strand, within PS417_00785at 175.820 kb on - strand, within PS417_00785at 175.832 kb on + strand, within PS417_00785at 175.906 kb on + strand, within PS417_00785at 175.907 kb on - strand, within PS417_00785at 175.907 kb on - strand, within PS417_00785at 176.062 kb on + strand, within PS417_00785at 176.062 kb on + strand, within PS417_00785at 176.062 kb on + strand, within PS417_00785at 176.063 kb on - strandat 176.063 kb on - strandat 176.150 kb on + strandat 176.151 kb on - strandat 176.151 kb on - strandat 176.289 kb on - strand, within PS417_00790at 176.342 kb on + strand, within PS417_00790at 176.342 kb on + strand, within PS417_00790at 176.342 kb on + strand, within PS417_00790at 176.342 kb on + strand, within PS417_00790at 176.343 kb on - strand, within PS417_00790at 176.615 kb on + strand, within PS417_00790at 176.666 kb on + strandat 176.667 kb on - strand, within PS417_00790at 176.667 kb on - strand, within PS417_00790at 176.667 kb on - strand, within PS417_00790at 176.877 kb on + strandat 176.877 kb on + strandat 176.877 kb on + strandat 176.877 kb on + strandat 176.877 kb on + strandat 176.878 kb on - strandat 176.878 kb on - strandat 176.966 kb on - strand, within PS417_00795at 176.966 kb on - strand, within PS417_00795at 177.001 kb on + strand, within PS417_00795at 177.002 kb on - strand, within PS417_00795at 177.119 kb on - strand, within PS417_00795at 177.119 kb on - strand, within PS417_00795at 177.197 kb on - strand, within PS417_00795at 177.240 kb on + strandat 177.241 kb on - strandat 177.322 kb on - strand, within PS417_00800at 177.331 kb on - strand, within PS417_00800at 177.331 kb on - strand, within PS417_00800at 177.331 kb on - strandat 177.403 kb on - strand, within PS417_00800at 177.448 kb on - strand, within PS417_00800at 177.448 kb on - strand, within PS417_00800at 177.451 kb on - strand, within PS417_00800at 177.573 kb on + strand, within PS417_00800at 177.573 kb on + strand, within PS417_00800at 177.574 kb on - strand, within PS417_00800at 177.574 kb on - strand, within PS417_00800at 177.603 kb on + strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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175,200 + PS417_00780 0.89 +0.2
175,201 - PS417_00780 0.89 -0.5
175,201 - PS417_00780 0.89 -0.2
175,322 - -2.4
175,360 - -0.5
175,360 - -0.4
175,397 + +1.1
175,425 + -1.9
175,425 + +1.2
175,426 - +0.5
175,506 + +0.5
175,506 + +0.5
175,556 + +0.9
175,603 + PS417_00785 0.11 +0.4
175,603 + PS417_00785 0.11 -0.3
175,604 - PS417_00785 0.11 +0.3
175,606 + PS417_00785 0.11 -1.6
175,606 + PS417_00785 0.11 +0.1
175,606 + PS417_00785 0.11 -0.3
175,607 - -1.5
175,607 - PS417_00785 0.12 +0.3
175,607 - PS417_00785 0.12 +0.1
175,819 + PS417_00785 0.48 +0.4
175,819 + PS417_00785 0.48 -0.2
175,820 - PS417_00785 0.48 -0.7
175,820 - PS417_00785 0.48 -0.9
175,820 - PS417_00785 0.48 -2.0
175,820 - PS417_00785 0.48 -0.7
175,832 + PS417_00785 0.50 -0.4
175,906 + PS417_00785 0.63 +1.0
175,907 - PS417_00785 0.63 +1.8
175,907 - PS417_00785 0.63 +1.0
176,062 + PS417_00785 0.90 +1.5
176,062 + PS417_00785 0.90 -0.8
176,062 + PS417_00785 0.90 -1.0
176,063 - +1.5
176,063 - -0.1
176,150 + -0.2
176,151 - -0.2
176,151 - -2.3
176,289 - PS417_00790 0.19 -3.5
176,342 + PS417_00790 0.26 -1.7
176,342 + PS417_00790 0.26 +1.2
176,342 + PS417_00790 0.26 -0.3
176,342 + PS417_00790 0.26 -0.3
176,343 - PS417_00790 0.27 +1.0
176,615 + PS417_00790 0.67 -2.0
176,666 + +1.5
176,667 - PS417_00790 0.74 -0.2
176,667 - PS417_00790 0.74 -2.4
176,667 - PS417_00790 0.74 +0.4
176,877 + -1.3
176,877 + +0.0
176,877 + +0.5
176,877 + -1.3
176,877 + +1.5
176,878 - +2.2
176,878 - -1.5
176,966 - PS417_00795 0.23 +0.6
176,966 - PS417_00795 0.23 +1.5
177,001 + PS417_00795 0.32 +0.1
177,002 - PS417_00795 0.33 -0.2
177,119 - PS417_00795 0.65 +0.6
177,119 - PS417_00795 0.65 -1.6
177,197 - PS417_00795 0.86 +0.6
177,240 + -2.6
177,241 - -0.9
177,322 - PS417_00800 0.12 -2.2
177,331 - PS417_00800 0.14 -0.8
177,331 - PS417_00800 0.14 +0.1
177,331 - -0.0
177,403 - PS417_00800 0.25 +0.5
177,448 - PS417_00800 0.31 -0.3
177,448 - PS417_00800 0.31 -0.6
177,451 - PS417_00800 0.32 -0.3
177,573 + PS417_00800 0.51 +0.9
177,573 + PS417_00800 0.51 -0.4
177,574 - PS417_00800 0.51 -0.7
177,574 - PS417_00800 0.51 +0.5
177,603 + PS417_00800 0.55 +0.5
177,604 - PS417_00800 0.55 +0.4
177,604 - PS417_00800 0.55 +0.1
177,604 - PS417_00800 0.55 +0.0
177,604 - PS417_00800 0.55 +1.9
177,604 - PS417_00800 0.55 +0.4

Or see this region's nucleotide sequence