Strain Fitness in Pseudomonas simiae WCS417 around PS417_07815

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
1,716,997	+				-1.3
1,716,997	+				+1.6
1,716,997	+				+0.6
1,716,998	-				-0.4
1,717,139	+		PS417_07810	0.23	+0.2
1,717,140	-		PS417_07810	0.23	-1.9
1,717,142	-		PS417_07810	0.23	-1.7
1,717,142	-		PS417_07810	0.23	+0.5
1,717,142	-		PS417_07810	0.23	-3.4
1,717,154	+		PS417_07810	0.25	-1.9
1,717,207	+		PS417_07810	0.31	-0.3
1,717,297	+		PS417_07810	0.41	-2.2
1,717,348	+		PS417_07810	0.47	+0.8
1,717,354	+		PS417_07810	0.47	+1.3
1,717,355	-		PS417_07810	0.48	-1.2
1,717,392	+		PS417_07810	0.52	-0.2
1,717,426	+		PS417_07810	0.56	+0.2
1,717,477	+		PS417_07810	0.62	-0.7
1,717,477	+		PS417_07810	0.62	-0.9
1,717,498	+		PS417_07810	0.64	-1.0
1,717,617	+		PS417_07810	0.78	+0.4
1,717,618	-		PS417_07810	0.78	+0.1
1,717,618	-		PS417_07810	0.78	+1.4
1,717,618	-		PS417_07810	0.78	+1.0
1,717,763	+				+2.9
1,717,993	+		PS417_07815	0.12	-1.5
1,717,993	+		PS417_07815	0.12	-0.9
1,718,100	+		PS417_07815	0.59	-0.5
1,718,100	+		PS417_07815	0.59	+0.7
1,718,100	+		PS417_07815	0.59	-1.0
1,718,100	+		PS417_07815	0.59	+0.2
1,718,100	+				-0.6
1,718,145	+		PS417_07815	0.79	-1.8
1,718,146	-		PS417_07815	0.80	-2.0
1,718,169	-				+0.5
1,718,192	-				-0.4
1,718,204	+				+0.2
1,718,204	+				+1.1
1,718,204	+				+0.1
1,718,205	-				-0.3
1,718,205	-				-0.1
1,718,211	-				+1.7
1,718,273	+				+2.7
1,718,274	-				-1.1
1,718,274	-				+1.1
1,718,274	-				-0.6
1,718,274	-				-0.2
1,718,284	+				-0.6
1,718,284	+				-0.1
1,718,285	-				+0.7
1,718,285	-				+0.9
1,718,285	-				+0.6
1,718,293	-				-1.4
1,718,326	+				-0.2
1,718,326	+				+1.4
1,718,326	+				+0.6
1,718,326	+				+1.0
1,718,326	+				+1.6
1,718,326	+				+0.4
1,718,326	+				+1.5
1,718,326	+				-0.1
1,718,327	-				+0.1
1,718,327	-				-0.0
1,718,327	-				+0.2
1,718,327	-				+0.2
1,718,327	-				+0.3
1,718,327	-				+4.0
1,718,354	+				+0.2
1,718,437	+				-0.2
1,718,437	+				+0.0
1,718,438	-				-0.2
1,718,438	-				+0.8
1,718,438	-				-0.2
1,718,640	+		PS417_07820	0.58	-1.2
1,718,640	+		PS417_07820	0.58	+0.3
1,718,641	-		PS417_07820	0.58	-0.9
1,718,641	-		PS417_07820	0.58	-2.4
1,718,790	+				-2.2
1,718,790	+				+2.5
1,718,790	+				+0.1
1,718,791	-				+1.1
1,718,791	-				+0.1
1,718,890	+		PS417_07825	0.35	-1.7
1,718,890	+		PS417_07825	0.35	-1.4
1,718,890	+		PS417_07825	0.35	-0.9
1,718,891	-		PS417_07825	0.35	-1.0
1,718,891	-		PS417_07825	0.35	-0.4
1,718,972	+		PS417_07825	0.59	+0.5
1,718,973	-		PS417_07825	0.60	-1.1
1,719,054	-		PS417_07825	0.84	+0.5
1,719,106	+				-0.5
1,719,106	+				-1.0
1,719,106	+				+0.1
1,719,107	-				+0.2
1,719,119	+				-0.4
1,719,119	+				-0.7
1,719,120	-				-3.4
1,719,120	-				-0.2