Strain Fitness in Pseudomonas simiae WCS417 around PS417_07545

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
1,658,566	-		PS417_07540	0.59	-0.3
1,658,567	+		PS417_07540	0.59	-0.5
1,658,567	+		PS417_07540	0.59	+0.0
1,658,568	-		PS417_07540	0.60	+2.2
1,658,663	-				+0.6
1,658,663	-				+0.2
1,658,666	+				-0.1
1,658,666	+				+0.4
1,658,666	+				-1.4
1,658,667	-				+0.6
1,658,667	-				-1.7
1,658,667	-				-0.1
1,658,675	+				-0.9
1,658,678	+				-0.9
1,658,678	+				-0.0
1,658,678	+				+0.4
1,658,708	+				+0.1
1,658,709	-				-0.2
1,658,709	-				-0.1
1,658,797	-				+0.6
1,658,819	-				-1.7
1,658,819	-				+0.6
1,658,839	-				+1.5
1,658,839	-				-2.8
1,658,870	-				+1.1
1,658,870	-				+0.2
1,658,877	+				+3.8
1,658,877	+				-0.5
1,658,877	+				-0.9
1,658,877	+				+0.7
1,658,877	+				-0.1
1,658,878	-				+0.1
1,658,878	-				-0.5
1,658,963	-				-1.1
1,659,016	-				-0.0
1,659,016	-				+1.6
1,659,155	-		PS417_07545	0.14	+2.1
1,659,155	-		PS417_07545	0.14	-3.5
1,659,241	+				+1.5
1,659,308	+				+1.5
1,659,339	+		PS417_07545	0.24	-2.0
1,659,461	+		PS417_07545	0.31	-1.9
1,659,462	-		PS417_07545	0.31	-0.6
1,659,511	+		PS417_07545	0.34	-0.5
1,659,511	+		PS417_07545	0.34	-1.5
1,659,511	+		PS417_07545	0.34	-2.6
1,659,511	+		PS417_07545	0.34	+4.6
1,659,512	-		PS417_07545	0.34	-0.2
1,659,512	-		PS417_07545	0.34	-1.5
1,659,553	+		PS417_07545	0.36	+0.2
1,659,554	-		PS417_07545	0.37	-0.9
1,659,554	-		PS417_07545	0.37	-2.2
1,659,763	+		PS417_07545	0.48	+1.0
1,659,763	+		PS417_07545	0.48	-1.9
1,659,764	-		PS417_07545	0.48	-0.3
1,659,764	-		PS417_07545	0.48	+2.5
1,659,764	-		PS417_07545	0.48	+0.3
1,659,979	+		PS417_07545	0.60	-1.7
1,659,980	-		PS417_07545	0.61	-0.3
1,659,980	-		PS417_07545	0.61	-0.9
1,659,980	-		PS417_07545	0.61	+0.6
1,660,087	+		PS417_07545	0.67	-1.1
1,660,087	+		PS417_07545	0.67	-0.1
1,660,622	-				+1.5
1,660,728	+				+0.4
1,660,729	-				-0.7
1,660,773	+				+0.4
1,660,774	-				-0.1
1,660,851	+				+1.5
1,660,873	-				+1.0
1,661,341	-		PS417_07550	0.29	-0.3
1,661,341	-		PS417_07550	0.29	-0.5
1,661,451	+		PS417_07550	0.35	+0.7
1,661,452	-		PS417_07550	0.35	-0.0
1,661,452	-		PS417_07550	0.35	+0.7
1,661,472	-		PS417_07550	0.36	-0.5
1,661,472	-		PS417_07550	0.36	+2.0
1,661,485	+		PS417_07550	0.37	+1.5