Strain Fitness in Pseudomonas simiae WCS417 around PS417_06930

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06920 and PS417_06925 overlap by 1 nucleotidesPS417_06925 and PS417_06930 are separated by 89 nucleotidesPS417_06930 and PS417_06935 overlap by 4 nucleotidesPS417_06935 and PS417_06940 are separated by 59 nucleotides PS417_06920: PS417_06920 - epimerase, at 1,532,004 to 1,532,678 _06920 PS417_06925: PS417_06925 - LysR family transcriptional regulator, at 1,532,678 to 1,533,586 _06925 PS417_06930: PS417_06930 - carnitine dehydratase, at 1,533,676 to 1,534,869 _06930 PS417_06935: PS417_06935 - hydroxymethylglutaryl-CoA lyase, at 1,534,866 to 1,535,807 _06935 PS417_06940: PS417_06940 - MFS transporter permease, at 1,535,867 to 1,537,198 _06940 Position (kb) 1533 1534 1535Strain fitness (log2 ratio) -2 -1 0 1at 1532.753 kb on - strandat 1533.275 kb on + strand, within PS417_06925at 1533.276 kb on - strand, within PS417_06925at 1533.307 kb on + strand, within PS417_06925at 1533.308 kb on - strand, within PS417_06925at 1533.437 kb on + strand, within PS417_06925at 1533.437 kb on + strand, within PS417_06925at 1533.438 kb on - strand, within PS417_06925at 1533.854 kb on - strand, within PS417_06930at 1534.409 kb on - strand, within PS417_06930at 1534.441 kb on + strand, within PS417_06930at 1534.441 kb on + strand, within PS417_06930at 1534.442 kb on - strand, within PS417_06930at 1534.442 kb on - strand, within PS417_06930at 1534.623 kb on + strand, within PS417_06930at 1534.628 kb on - strand, within PS417_06930at 1534.879 kb on - strandat 1535.101 kb on - strand, within PS417_06935at 1535.101 kb on - strand, within PS417_06935at 1535.697 kb on - strand, within PS417_06935at 1535.697 kb on - strand, within PS417_06935at 1535.697 kb on - strand, within PS417_06935at 1535.697 kb on - strand, within PS417_06935at 1535.697 kb on - strand, within PS417_06935

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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1,532,753 - -0.8
1,533,275 + PS417_06925 0.66 +0.4
1,533,276 - PS417_06925 0.66 -1.4
1,533,307 + PS417_06925 0.69 -1.2
1,533,308 - PS417_06925 0.69 -0.6
1,533,437 + PS417_06925 0.83 -0.7
1,533,437 + PS417_06925 0.83 -0.2
1,533,438 - PS417_06925 0.84 +0.4
1,533,854 - PS417_06930 0.15 -1.7
1,534,409 - PS417_06930 0.61 -1.6
1,534,441 + PS417_06930 0.64 +1.4
1,534,441 + PS417_06930 0.64 +0.4
1,534,442 - PS417_06930 0.64 +0.4
1,534,442 - PS417_06930 0.64 -2.0
1,534,623 + PS417_06930 0.79 +0.1
1,534,628 - PS417_06930 0.80 -1.8
1,534,879 - -0.7
1,535,101 - PS417_06935 0.25 -2.5
1,535,101 - PS417_06935 0.25 +0.1
1,535,697 - PS417_06935 0.88 -0.2
1,535,697 - PS417_06935 0.88 -1.1
1,535,697 - PS417_06935 0.88 -0.4
1,535,697 - PS417_06935 0.88 +1.0
1,535,697 - PS417_06935 0.88 -1.5

Or see this region's nucleotide sequence