Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00680 and PS417_00685 are separated by 130 nucleotides PS417_00685 and PS417_00690 overlap by 4 nucleotides
PS417_00680: PS417_00680 - TonB-dependent receptor, at 139,370 to 141,823
_00680
PS417_00685: PS417_00685 - hypothetical protein, at 141,954 to 142,658
_00685
PS417_00690: PS417_00690 - hypothetical protein, at 142,655 to 144,823
_00690
Position (kb) 141
142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 140.966 kb on + strand, within PS417_00680 at 140.966 kb on + strand, within PS417_00680 at 140.992 kb on + strand, within PS417_00680 at 141.113 kb on + strand, within PS417_00680 at 141.114 kb on - strand, within PS417_00680 at 141.114 kb on - strand, within PS417_00680 at 141.243 kb on - strand, within PS417_00680 at 141.340 kb on + strand, within PS417_00680 at 141.446 kb on + strand, within PS417_00680 at 141.447 kb on - strand, within PS417_00680 at 141.524 kb on + strand, within PS417_00680 at 141.524 kb on + strand, within PS417_00680 at 141.608 kb on + strand at 141.608 kb on + strand at 141.609 kb on - strand at 141.609 kb on - strand at 141.635 kb on + strand at 141.636 kb on - strand at 141.740 kb on + strand at 141.741 kb on - strand at 141.741 kb on - strand at 141.741 kb on - strand at 141.773 kb on + strand at 141.773 kb on + strand at 141.774 kb on - strand at 141.776 kb on + strand at 141.813 kb on - strand at 141.821 kb on + strand at 141.839 kb on - strand at 141.980 kb on - strand at 142.006 kb on - strand at 142.006 kb on - strand at 142.009 kb on + strand at 142.087 kb on + strand, within PS417_00685 at 142.123 kb on + strand, within PS417_00685 at 142.123 kb on + strand, within PS417_00685 at 142.123 kb on + strand, within PS417_00685 at 142.124 kb on - strand, within PS417_00685 at 142.373 kb on - strand, within PS417_00685 at 142.522 kb on + strand at 142.522 kb on + strand, within PS417_00685 at 142.589 kb on - strand at 142.662 kb on + strand at 142.665 kb on + strand at 142.666 kb on - strand at 142.666 kb on - strand at 142.770 kb on + strand at 142.770 kb on + strand at 142.770 kb on + strand at 143.124 kb on + strand, within PS417_00690 at 143.124 kb on + strand, within PS417_00690 at 143.125 kb on - strand, within PS417_00690 at 143.325 kb on + strand, within PS417_00690 at 143.325 kb on + strand, within PS417_00690 at 143.325 kb on + strand, within PS417_00690 at 143.326 kb on - strand, within PS417_00690 at 143.394 kb on + strand, within PS417_00690 at 143.395 kb on - strand, within PS417_00690 at 143.544 kb on + strand, within PS417_00690 at 143.545 kb on - strand, within PS417_00690 at 143.545 kb on - strand, within PS417_00690 at 143.610 kb on + strand at 143.611 kb on - strand, within PS417_00690 at 143.640 kb on + strand, within PS417_00690 at 143.641 kb on - strand, within PS417_00690 at 143.641 kb on - strand, within PS417_00690
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 140,966 + PS417_00680 0.65 +0.6 140,966 + PS417_00680 0.65 +0.6 140,992 + PS417_00680 0.66 -0.0 141,113 + PS417_00680 0.71 +0.8 141,114 - PS417_00680 0.71 +1.4 141,114 - PS417_00680 0.71 -1.1 141,243 - PS417_00680 0.76 +0.3 141,340 + PS417_00680 0.80 -1.4 141,446 + PS417_00680 0.85 +0.3 141,447 - PS417_00680 0.85 +0.4 141,524 + PS417_00680 0.88 +0.4 141,524 + PS417_00680 0.88 -0.5 141,608 + +0.5 141,608 + +2.7 141,609 - -2.1 141,609 - -2.4 141,635 + -0.5 141,636 - +0.2 141,740 + -0.1 141,741 - +0.2 141,741 - +0.5 141,741 - -1.6 141,773 + +0.1 141,773 + -0.0 141,774 - +0.5 141,776 + +2.1 141,813 - -1.9 141,821 + -0.3 141,839 - -0.8 141,980 - -0.3 142,006 - -0.6 142,006 - +1.5 142,009 + -1.8 142,087 + PS417_00685 0.19 -1.8 142,123 + PS417_00685 0.24 -1.4 142,123 + PS417_00685 0.24 -0.0 142,123 + PS417_00685 0.24 -1.8 142,124 - PS417_00685 0.24 -0.0 142,373 - PS417_00685 0.59 -0.5 142,522 + +0.5 142,522 + PS417_00685 0.81 +0.4 142,589 - -0.4 142,662 + -0.5 142,665 + -1.0 142,666 - -0.3 142,666 - -0.6 142,770 + +0.2 142,770 + +2.9 142,770 + -3.0 143,124 + PS417_00690 0.22 +1.1 143,124 + PS417_00690 0.22 -0.1 143,125 - PS417_00690 0.22 +1.0 143,325 + PS417_00690 0.31 +0.3 143,325 + PS417_00690 0.31 +0.0 143,325 + PS417_00690 0.31 -2.7 143,326 - PS417_00690 0.31 +0.5 143,394 + PS417_00690 0.34 -1.6 143,395 - PS417_00690 0.34 -0.0 143,544 + PS417_00690 0.41 -0.2 143,545 - PS417_00690 0.41 +2.7 143,545 - PS417_00690 0.41 -0.0 143,610 + -0.8 143,611 - PS417_00690 0.44 -0.6 143,640 + PS417_00690 0.45 +0.4 143,641 - PS417_00690 0.45 +2.1 143,641 - PS417_00690 0.45 -0.6
Or see this region's nucleotide sequence