Strain Fitness in Pseudomonas simiae WCS417 around PS417_05980

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05970 and PS417_05975 overlap by 4 nucleotidesPS417_05975 and PS417_05980 overlap by 4 nucleotidesPS417_05980 and PS417_05985 overlap by 4 nucleotides PS417_05970: PS417_05970 - chemotaxis protein CheR, at 1,327,235 to 1,328,494 _05970 PS417_05975: PS417_05975 - chemotaxis protein CheW, at 1,328,491 to 1,329,192 _05975 PS417_05980: PS417_05980 - chemotaxis protein CheA, at 1,329,189 to 1,331,453 _05980 PS417_05985: PS417_05985 - chemotaxis protein CheY, at 1,331,450 to 1,332,460 _05985 Position (kb) 1329 1330 1331 1332Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1328.249 kb on + strand, within PS417_05970at 1328.250 kb on - strand, within PS417_05970at 1328.250 kb on - strand, within PS417_05970at 1328.250 kb on - strand, within PS417_05970at 1328.326 kb on - strand, within PS417_05970at 1328.326 kb on - strand, within PS417_05970at 1328.339 kb on + strand, within PS417_05970at 1328.340 kb on - strand, within PS417_05970at 1328.496 kb on + strandat 1328.497 kb on - strandat 1329.101 kb on - strand, within PS417_05975at 1329.263 kb on - strandat 1329.441 kb on + strand, within PS417_05980at 1329.458 kb on + strand, within PS417_05980at 1329.458 kb on + strand, within PS417_05980at 1329.459 kb on - strand, within PS417_05980at 1329.544 kb on - strand, within PS417_05980at 1329.544 kb on - strandat 1329.799 kb on - strand, within PS417_05980at 1329.844 kb on + strand, within PS417_05980at 1330.021 kb on - strand, within PS417_05980at 1330.021 kb on - strand, within PS417_05980at 1330.021 kb on - strand, within PS417_05980at 1330.121 kb on - strand, within PS417_05980at 1330.517 kb on + strand, within PS417_05980at 1330.518 kb on - strand, within PS417_05980at 1330.592 kb on - strand, within PS417_05980at 1330.848 kb on + strand, within PS417_05980at 1330.849 kb on - strand, within PS417_05980at 1330.932 kb on - strand, within PS417_05980at 1331.138 kb on - strand, within PS417_05980at 1331.138 kb on - strand, within PS417_05980at 1331.141 kb on + strand, within PS417_05980at 1331.142 kb on - strand, within PS417_05980at 1331.231 kb on + strandat 1331.237 kb on + strandat 1331.237 kb on + strandat 1331.322 kb on + strandat 1331.323 kb on - strandat 1331.374 kb on - strandat 1331.376 kb on + strandat 1331.376 kb on + strandat 1331.376 kb on + strandat 1331.376 kb on + strandat 1331.377 kb on - strandat 1331.377 kb on - strandat 1331.752 kb on - strand, within PS417_05985at 1332.168 kb on - strand, within PS417_05985at 1332.262 kb on - strand, within PS417_05985at 1332.307 kb on - strand, within PS417_05985

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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1,328,249 + PS417_05970 0.80 +0.1
1,328,250 - PS417_05970 0.81 -1.2
1,328,250 - PS417_05970 0.81 +0.4
1,328,250 - PS417_05970 0.81 +2.7
1,328,326 - PS417_05970 0.87 -0.6
1,328,326 - PS417_05970 0.87 +0.6
1,328,339 + PS417_05970 0.88 -1.5
1,328,340 - PS417_05970 0.88 +0.1
1,328,496 + +0.3
1,328,497 - +1.2
1,329,101 - PS417_05975 0.87 +1.2
1,329,263 - +1.4
1,329,441 + PS417_05980 0.11 +0.8
1,329,458 + PS417_05980 0.12 +1.5
1,329,458 + PS417_05980 0.12 +0.2
1,329,459 - PS417_05980 0.12 +0.1
1,329,544 - PS417_05980 0.16 -1.2
1,329,544 - -0.6
1,329,799 - PS417_05980 0.27 +0.0
1,329,844 + PS417_05980 0.29 +1.0
1,330,021 - PS417_05980 0.37 +0.8
1,330,021 - PS417_05980 0.37 +0.6
1,330,021 - PS417_05980 0.37 +1.4
1,330,121 - PS417_05980 0.41 -0.1
1,330,517 + PS417_05980 0.59 -1.3
1,330,518 - PS417_05980 0.59 +0.5
1,330,592 - PS417_05980 0.62 -0.9
1,330,848 + PS417_05980 0.73 -0.1
1,330,849 - PS417_05980 0.73 -0.2
1,330,932 - PS417_05980 0.77 +0.3
1,331,138 - PS417_05980 0.86 -1.6
1,331,138 - PS417_05980 0.86 -0.2
1,331,141 + PS417_05980 0.86 +0.6
1,331,142 - PS417_05980 0.86 -0.5
1,331,231 + -0.7
1,331,237 + -4.7
1,331,237 + -2.5
1,331,322 + -0.0
1,331,323 - +1.4
1,331,374 - -0.2
1,331,376 + -0.6
1,331,376 + -1.8
1,331,376 + -1.1
1,331,376 + +0.4
1,331,377 - -1.8
1,331,377 - -0.3
1,331,752 - PS417_05985 0.30 -0.6
1,332,168 - PS417_05985 0.71 +0.4
1,332,262 - PS417_05985 0.80 -2.4
1,332,307 - PS417_05985 0.85 -3.8

Or see this region's nucleotide sequence