Experiment: JP1 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04120 and PS417_04125 are separated by 79 nucleotides PS417_04125 and PS417_04130 are separated by 148 nucleotides
PS417_04120: PS417_04120 - tryptophan--tRNA ligase, at 925,948 to 927,303
_04120
PS417_04125: PS417_04125 - ATPase, at 927,383 to 928,477
_04125
PS417_04130: PS417_04130 - AraC family transcriptional regulator, at 928,626 to 929,621
_04130
Position (kb) 927
928
929 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 927.479 kb on + strand at 927.550 kb on + strand, within PS417_04125 at 927.890 kb on + strand, within PS417_04125 at 928.380 kb on - strand at 928.537 kb on - strand at 928.537 kb on - strand at 928.540 kb on + strand at 928.540 kb on + strand at 928.540 kb on + strand at 928.541 kb on - strand at 928.717 kb on + strand at 928.730 kb on - strand, within PS417_04130 at 928.730 kb on - strand, within PS417_04130 at 928.730 kb on - strand, within PS417_04130 at 928.805 kb on - strand, within PS417_04130 at 928.959 kb on + strand, within PS417_04130 at 928.960 kb on - strand, within PS417_04130 at 928.960 kb on - strand, within PS417_04130 at 928.996 kb on + strand, within PS417_04130 at 929.075 kb on - strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.081 kb on - strand, within PS417_04130 at 929.117 kb on - strand, within PS417_04130 at 929.161 kb on - strand, within PS417_04130 at 929.161 kb on - strand, within PS417_04130 at 929.203 kb on + strand, within PS417_04130 at 929.204 kb on - strand, within PS417_04130 at 929.304 kb on + strand, within PS417_04130 at 929.304 kb on + strand, within PS417_04130 at 929.305 kb on - strand, within PS417_04130 at 929.305 kb on - strand, within PS417_04130
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 10 remove 927,479 + +0.8 927,550 + PS417_04125 0.15 -0.8 927,890 + PS417_04125 0.46 +1.8 928,380 - +1.3 928,537 - +0.1 928,537 - -1.1 928,540 + +1.4 928,540 + +0.5 928,540 + -0.1 928,541 - -0.5 928,717 + -2.7 928,730 - PS417_04130 0.10 +0.2 928,730 - PS417_04130 0.10 -0.7 928,730 - PS417_04130 0.10 +0.0 928,805 - PS417_04130 0.18 -1.0 928,959 + PS417_04130 0.33 -0.1 928,960 - PS417_04130 0.34 -1.7 928,960 - PS417_04130 0.34 +0.2 928,996 + PS417_04130 0.37 +0.3 929,075 - PS417_04130 0.45 -0.3 929,078 + PS417_04130 0.45 -2.7 929,078 + PS417_04130 0.45 -1.2 929,078 + PS417_04130 0.45 +0.1 929,079 - PS417_04130 0.45 -0.9 929,079 - PS417_04130 0.45 -0.0 929,079 - PS417_04130 0.45 -1.0 929,080 + PS417_04130 0.46 -0.2 929,080 + PS417_04130 0.46 +1.1 929,080 + PS417_04130 0.46 +0.1 929,081 - PS417_04130 0.46 -2.4 929,117 - PS417_04130 0.49 -0.2 929,161 - PS417_04130 0.54 -2.0 929,161 - PS417_04130 0.54 -1.8 929,203 + PS417_04130 0.58 +2.9 929,204 - PS417_04130 0.58 +1.8 929,304 + PS417_04130 0.68 -0.7 929,304 + PS417_04130 0.68 -0.2 929,305 - PS417_04130 0.68 -0.4 929,305 - PS417_04130 0.68 +0.3
Or see this region's nucleotide sequence