Strain Fitness in Pseudomonas simiae WCS417 around PS417_24200

Experiment: JP1 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24190 and PS417_24195 are separated by 157 nucleotidesPS417_24195 and PS417_24200 are separated by 144 nucleotidesPS417_24200 and PS417_24205 are separated by 167 nucleotides PS417_24190: PS417_24190 - AraC family transcriptional regulator, at 5,247,189 to 5,248,043 _24190 PS417_24195: PS417_24195 - GNAT family acetyltransferase, at 5,248,201 to 5,248,749 _24195 PS417_24200: PS417_24200 - GCN5 family acetyltransferase, at 5,248,894 to 5,249,331 _24200 PS417_24205: PS417_24205 - hypothetical protein, at 5,249,499 to 5,250,524 _24205 Position (kb) 5248 5249 5250Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5247.940 kb on + strand, within PS417_24190at 5247.941 kb on - strand, within PS417_24190at 5247.941 kb on - strand, within PS417_24190at 5247.941 kb on - strand, within PS417_24190at 5247.941 kb on - strand, within PS417_24190at 5247.941 kb on - strand, within PS417_24190at 5247.941 kb on - strand, within PS417_24190at 5247.941 kb on - strand, within PS417_24190at 5248.043 kb on + strandat 5248.044 kb on - strandat 5248.057 kb on + strandat 5248.058 kb on - strandat 5248.069 kb on + strandat 5248.070 kb on - strandat 5248.112 kb on + strandat 5248.140 kb on - strandat 5248.161 kb on - strandat 5248.161 kb on - strandat 5248.166 kb on - strandat 5248.200 kb on + strandat 5248.209 kb on + strandat 5248.210 kb on - strandat 5248.262 kb on + strand, within PS417_24195at 5248.263 kb on - strand, within PS417_24195at 5248.264 kb on + strand, within PS417_24195at 5248.264 kb on + strand, within PS417_24195at 5248.265 kb on - strand, within PS417_24195at 5248.270 kb on + strand, within PS417_24195at 5248.270 kb on + strand, within PS417_24195at 5248.270 kb on + strand, within PS417_24195at 5248.375 kb on + strand, within PS417_24195at 5248.375 kb on + strand, within PS417_24195at 5248.375 kb on + strand, within PS417_24195at 5248.376 kb on - strand, within PS417_24195at 5248.376 kb on - strand, within PS417_24195at 5248.376 kb on - strand, within PS417_24195at 5248.376 kb on - strand, within PS417_24195at 5248.376 kb on - strand, within PS417_24195at 5248.376 kb on - strand, within PS417_24195at 5248.431 kb on - strand, within PS417_24195at 5248.476 kb on - strand, within PS417_24195at 5248.476 kb on - strand, within PS417_24195at 5248.476 kb on - strand, within PS417_24195at 5248.588 kb on + strand, within PS417_24195at 5248.667 kb on - strand, within PS417_24195at 5248.667 kb on - strand, within PS417_24195at 5248.747 kb on + strandat 5248.779 kb on + strandat 5248.780 kb on - strandat 5248.780 kb on - strandat 5248.802 kb on - strandat 5248.815 kb on - strandat 5248.815 kb on - strandat 5248.838 kb on + strandat 5248.975 kb on + strandat 5248.984 kb on - strand, within PS417_24200at 5248.987 kb on - strand, within PS417_24200at 5248.990 kb on - strand, within PS417_24200at 5248.990 kb on - strand, within PS417_24200at 5248.990 kb on - strand, within PS417_24200at 5249.064 kb on - strand, within PS417_24200at 5249.118 kb on + strand, within PS417_24200at 5249.119 kb on - strand, within PS417_24200at 5249.187 kb on - strand, within PS417_24200at 5249.224 kb on + strand, within PS417_24200at 5249.307 kb on + strandat 5249.307 kb on + strandat 5249.377 kb on - strandat 5249.409 kb on - strandat 5249.409 kb on - strandat 5249.409 kb on - strandat 5249.603 kb on + strand, within PS417_24205at 5249.643 kb on + strand, within PS417_24205at 5249.643 kb on + strand, within PS417_24205at 5249.647 kb on - strand, within PS417_24205at 5249.649 kb on + strand, within PS417_24205at 5249.649 kb on + strand, within PS417_24205at 5249.650 kb on - strand, within PS417_24205at 5249.650 kb on - strand, within PS417_24205at 5249.758 kb on + strand, within PS417_24205at 5249.758 kb on + strand, within PS417_24205at 5249.758 kb on + strand, within PS417_24205at 5249.758 kb on + strand, within PS417_24205at 5249.759 kb on - strand, within PS417_24205at 5249.850 kb on + strand, within PS417_24205at 5249.850 kb on + strand, within PS417_24205at 5249.850 kb on + strand, within PS417_24205at 5249.850 kb on + strand, within PS417_24205at 5249.851 kb on - strand, within PS417_24205at 5249.851 kb on - strand, within PS417_24205at 5249.920 kb on - strand, within PS417_24205at 5249.920 kb on - strand, within PS417_24205at 5249.984 kb on + strand, within PS417_24205at 5250.042 kb on + strand, within PS417_24205at 5250.043 kb on - strand, within PS417_24205at 5250.045 kb on - strand, within PS417_24205at 5250.114 kb on + strand, within PS417_24205at 5250.115 kb on - strand, within PS417_24205at 5250.273 kb on + strand, within PS417_24205

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 10
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5,247,940 + PS417_24190 0.88 -0.7
5,247,941 - PS417_24190 0.88 +0.2
5,247,941 - PS417_24190 0.88 +0.9
5,247,941 - PS417_24190 0.88 -0.5
5,247,941 - PS417_24190 0.88 -1.0
5,247,941 - PS417_24190 0.88 +1.1
5,247,941 - PS417_24190 0.88 -1.0
5,247,941 - PS417_24190 0.88 +0.9
5,248,043 + +0.6
5,248,044 - +0.1
5,248,057 + -2.5
5,248,058 - +1.7
5,248,069 + +0.0
5,248,070 - -1.2
5,248,112 + +0.7
5,248,140 - +0.0
5,248,161 - +0.9
5,248,161 - +2.3
5,248,166 - -0.6
5,248,200 + +0.2
5,248,209 + +1.7
5,248,210 - +0.7
5,248,262 + PS417_24195 0.11 -1.4
5,248,263 - PS417_24195 0.11 +0.2
5,248,264 + PS417_24195 0.11 +3.0
5,248,264 + PS417_24195 0.11 -1.1
5,248,265 - PS417_24195 0.12 -1.8
5,248,270 + PS417_24195 0.13 +0.1
5,248,270 + PS417_24195 0.13 -0.9
5,248,270 + PS417_24195 0.13 -2.7
5,248,375 + PS417_24195 0.32 +0.7
5,248,375 + PS417_24195 0.32 -0.9
5,248,375 + PS417_24195 0.32 +0.9
5,248,376 - PS417_24195 0.32 -0.9
5,248,376 - PS417_24195 0.32 -0.1
5,248,376 - PS417_24195 0.32 -0.4
5,248,376 - PS417_24195 0.32 +0.3
5,248,376 - PS417_24195 0.32 -1.8
5,248,376 - PS417_24195 0.32 -0.1
5,248,431 - PS417_24195 0.42 +1.2
5,248,476 - PS417_24195 0.50 -0.2
5,248,476 - PS417_24195 0.50 +0.4
5,248,476 - PS417_24195 0.50 +1.1
5,248,588 + PS417_24195 0.70 -2.3
5,248,667 - PS417_24195 0.85 +0.3
5,248,667 - PS417_24195 0.85 -0.4
5,248,747 + -1.4
5,248,779 + -0.0
5,248,780 - +0.2
5,248,780 - +0.0
5,248,802 - +0.4
5,248,815 - -0.7
5,248,815 - +0.3
5,248,838 + -2.4
5,248,975 + +0.1
5,248,984 - PS417_24200 0.21 +4.4
5,248,987 - PS417_24200 0.21 +0.8
5,248,990 - PS417_24200 0.22 -1.3
5,248,990 - PS417_24200 0.22 -0.6
5,248,990 - PS417_24200 0.22 +0.8
5,249,064 - PS417_24200 0.39 -1.2
5,249,118 + PS417_24200 0.51 +2.0
5,249,119 - PS417_24200 0.51 +0.4
5,249,187 - PS417_24200 0.67 +0.9
5,249,224 + PS417_24200 0.75 -1.6
5,249,307 + +1.1
5,249,307 + -1.1
5,249,377 - +2.7
5,249,409 - +0.0
5,249,409 - -1.0
5,249,409 - +1.7
5,249,603 + PS417_24205 0.10 -0.3
5,249,643 + PS417_24205 0.14 -1.0
5,249,643 + PS417_24205 0.14 -0.9
5,249,647 - PS417_24205 0.14 +0.5
5,249,649 + PS417_24205 0.15 -1.0
5,249,649 + PS417_24205 0.15 -1.1
5,249,650 - PS417_24205 0.15 +0.2
5,249,650 - PS417_24205 0.15 +0.2
5,249,758 + PS417_24205 0.25 +0.4
5,249,758 + PS417_24205 0.25 +0.2
5,249,758 + PS417_24205 0.25 -0.3
5,249,758 + PS417_24205 0.25 -0.1
5,249,759 - PS417_24205 0.25 -0.8
5,249,850 + PS417_24205 0.34 -0.1
5,249,850 + PS417_24205 0.34 +0.9
5,249,850 + PS417_24205 0.34 +2.7
5,249,850 + PS417_24205 0.34 +0.7
5,249,851 - PS417_24205 0.34 -0.5
5,249,851 - PS417_24205 0.34 +0.2
5,249,920 - PS417_24205 0.41 +1.0
5,249,920 - PS417_24205 0.41 +1.2
5,249,984 + PS417_24205 0.47 -2.5
5,250,042 + PS417_24205 0.53 +0.5
5,250,043 - PS417_24205 0.53 -0.2
5,250,045 - PS417_24205 0.53 +0.8
5,250,114 + PS417_24205 0.60 -0.9
5,250,115 - PS417_24205 0.60 -0.5
5,250,273 + PS417_24205 0.75 +1.1

Or see this region's nucleotide sequence