Strain Fitness in Pseudomonas simiae WCS417 around PS417_03330

Experiment: JP1 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03325 and PS417_03330 are separated by 261 nucleotidesPS417_03330 and PS417_03335 are separated by 185 nucleotides PS417_03325: PS417_03325 - acid phosphatase, at 760,842 to 762,542 _03325 PS417_03330: PS417_03330 - Short chain fatty acid transporter, at 762,804 to 764,222 _03330 PS417_03335: PS417_03335 - MFS transporter, at 764,408 to 765,697 _03335 Position (kb) 762 763 764 765Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 761.821 kb on + strand, within PS417_03325at 761.821 kb on + strand, within PS417_03325at 761.822 kb on - strand, within PS417_03325at 761.822 kb on - strand, within PS417_03325at 762.013 kb on + strand, within PS417_03325at 762.086 kb on - strand, within PS417_03325at 762.113 kb on - strand, within PS417_03325at 762.510 kb on + strandat 762.634 kb on + strandat 762.656 kb on + strandat 762.727 kb on - strandat 762.727 kb on - strandat 762.852 kb on + strandat 762.955 kb on + strand, within PS417_03330at 762.956 kb on - strand, within PS417_03330at 762.956 kb on - strand, within PS417_03330at 762.956 kb on - strand, within PS417_03330at 762.956 kb on - strand, within PS417_03330at 762.997 kb on + strand, within PS417_03330at 763.025 kb on - strand, within PS417_03330at 763.054 kb on + strand, within PS417_03330at 763.055 kb on - strand, within PS417_03330at 763.055 kb on - strand, within PS417_03330at 763.117 kb on + strand, within PS417_03330at 763.138 kb on + strand, within PS417_03330at 763.138 kb on + strand, within PS417_03330at 763.138 kb on + strand, within PS417_03330at 763.138 kb on + strand, within PS417_03330at 763.138 kb on + strand, within PS417_03330at 763.139 kb on - strand, within PS417_03330at 763.139 kb on - strand, within PS417_03330at 763.178 kb on + strand, within PS417_03330at 763.179 kb on - strand, within PS417_03330at 763.179 kb on - strand, within PS417_03330at 763.179 kb on - strand, within PS417_03330at 763.768 kb on + strand, within PS417_03330at 763.769 kb on - strand, within PS417_03330at 763.987 kb on + strand, within PS417_03330at 764.236 kb on + strandat 764.236 kb on + strandat 764.236 kb on + strandat 764.237 kb on - strandat 764.237 kb on - strandat 764.237 kb on - strandat 764.238 kb on + strandat 764.238 kb on + strandat 764.238 kb on + strandat 764.238 kb on + strandat 764.239 kb on - strandat 764.239 kb on - strandat 764.239 kb on - strandat 764.239 kb on - strandat 764.239 kb on - strandat 764.239 kb on - strandat 764.239 kb on - strandat 764.239 kb on - strandat 764.239 kb on - strandat 764.243 kb on - strandat 764.243 kb on - strandat 764.243 kb on - strandat 764.243 kb on - strandat 764.243 kb on - strandat 764.243 kb on - strandat 764.243 kb on - strandat 764.245 kb on + strandat 764.257 kb on + strandat 764.332 kb on + strandat 764.333 kb on - strandat 764.333 kb on - strandat 764.333 kb on - strandat 764.335 kb on - strandat 764.335 kb on - strandat 764.744 kb on + strand, within PS417_03335at 764.744 kb on + strand, within PS417_03335at 764.916 kb on - strand, within PS417_03335at 764.981 kb on + strand, within PS417_03335at 764.982 kb on - strand, within PS417_03335

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 10
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761,821 + PS417_03325 0.58 -0.7
761,821 + PS417_03325 0.58 +0.3
761,822 - PS417_03325 0.58 +0.9
761,822 - PS417_03325 0.58 -1.8
762,013 + PS417_03325 0.69 -2.4
762,086 - PS417_03325 0.73 -1.0
762,113 - PS417_03325 0.75 +0.8
762,510 + +0.3
762,634 + -0.2
762,656 + +1.6
762,727 - -0.6
762,727 - -1.2
762,852 + -1.0
762,955 + PS417_03330 0.11 +0.7
762,956 - PS417_03330 0.11 -0.2
762,956 - PS417_03330 0.11 +0.6
762,956 - PS417_03330 0.11 +0.7
762,956 - PS417_03330 0.11 -0.4
762,997 + PS417_03330 0.14 -1.5
763,025 - PS417_03330 0.16 -0.1
763,054 + PS417_03330 0.18 -0.6
763,055 - PS417_03330 0.18 +0.3
763,055 - PS417_03330 0.18 +1.4
763,117 + PS417_03330 0.22 -2.6
763,138 + PS417_03330 0.24 -1.9
763,138 + PS417_03330 0.24 -0.2
763,138 + PS417_03330 0.24 +0.8
763,138 + PS417_03330 0.24 -1.3
763,138 + PS417_03330 0.24 -2.3
763,139 - PS417_03330 0.24 -0.8
763,139 - PS417_03330 0.24 -0.7
763,178 + PS417_03330 0.26 -1.1
763,179 - PS417_03330 0.26 -0.5
763,179 - PS417_03330 0.26 +1.2
763,179 - PS417_03330 0.26 -3.3
763,768 + PS417_03330 0.68 -0.7
763,769 - PS417_03330 0.68 -0.7
763,987 + PS417_03330 0.83 -3.0
764,236 + -0.0
764,236 + -0.7
764,236 + -0.0
764,237 - -0.3
764,237 - -0.1
764,237 - -0.4
764,238 + -0.2
764,238 + +0.3
764,238 + -0.2
764,238 + +0.0
764,239 - -1.5
764,239 - +0.1
764,239 - -0.7
764,239 - +1.5
764,239 - +0.6
764,239 - +0.2
764,239 - +0.0
764,239 - -0.4
764,239 - +0.1
764,243 - -0.9
764,243 - +0.3
764,243 - +0.5
764,243 - +0.5
764,243 - +3.6
764,243 - -0.6
764,243 - +0.7
764,245 + +0.3
764,257 + -0.3
764,332 + -0.2
764,333 - +0.2
764,333 - +0.7
764,333 - -0.6
764,335 - +1.3
764,335 - +0.6
764,744 + PS417_03335 0.26 +0.3
764,744 + PS417_03335 0.26 +1.1
764,916 - PS417_03335 0.39 -2.1
764,981 + PS417_03335 0.44 +0.6
764,982 - PS417_03335 0.44 +0.0

Or see this region's nucleotide sequence