Experiment: JP1 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02835 and PS417_02840 are separated by 320 nucleotides PS417_02840 and PS417_02845 are separated by 40 nucleotides
PS417_02835: PS417_02835 - branched-chain amino acid ABC transporter substrate-binding protein, at 642,062 to 643,327
_02835
PS417_02840: PS417_02840 - hypothetical protein, at 643,648 to 649,542
_02840
PS417_02845: PS417_02845 - ABC transporter permease, at 649,583 to 650,593
_02845
Position (kb) 643
644
645
646
647
648
649
650 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 642.717 kb on + strand, within PS417_02835 at 642.718 kb on - strand, within PS417_02835 at 642.718 kb on - strand, within PS417_02835 at 642.802 kb on - strand, within PS417_02835 at 642.858 kb on + strand, within PS417_02835 at 642.859 kb on - strand, within PS417_02835 at 642.903 kb on + strand, within PS417_02835 at 642.903 kb on + strand, within PS417_02835 at 642.903 kb on + strand, within PS417_02835 at 642.936 kb on + strand, within PS417_02835 at 642.948 kb on + strand, within PS417_02835 at 643.541 kb on + strand at 643.541 kb on + strand at 643.541 kb on + strand at 643.545 kb on + strand at 643.545 kb on + strand at 643.575 kb on + strand at 643.576 kb on - strand at 643.757 kb on + strand at 643.757 kb on + strand at 643.757 kb on + strand at 643.757 kb on + strand at 643.757 kb on + strand at 643.758 kb on - strand at 643.792 kb on + strand at 643.793 kb on - strand at 643.831 kb on + strand at 643.832 kb on - strand at 643.832 kb on - strand at 643.832 kb on - strand at 643.886 kb on + strand at 643.922 kb on + strand at 643.922 kb on + strand at 644.021 kb on + strand at 644.021 kb on + strand at 644.098 kb on + strand at 644.207 kb on - strand at 644.207 kb on - strand at 644.236 kb on + strand at 644.236 kb on + strand at 644.237 kb on - strand at 644.332 kb on + strand, within PS417_02840 at 644.333 kb on - strand, within PS417_02840 at 644.485 kb on + strand, within PS417_02840 at 644.485 kb on + strand, within PS417_02840 at 644.486 kb on - strand, within PS417_02840 at 644.581 kb on + strand, within PS417_02840 at 644.582 kb on - strand at 644.725 kb on + strand, within PS417_02840 at 644.726 kb on - strand, within PS417_02840 at 644.733 kb on + strand, within PS417_02840 at 645.109 kb on + strand, within PS417_02840 at 645.129 kb on - strand, within PS417_02840 at 645.226 kb on + strand, within PS417_02840 at 645.371 kb on - strand, within PS417_02840 at 645.404 kb on - strand, within PS417_02840 at 645.404 kb on - strand, within PS417_02840 at 645.404 kb on - strand, within PS417_02840 at 645.634 kb on - strand, within PS417_02840 at 645.641 kb on + strand, within PS417_02840 at 645.641 kb on + strand, within PS417_02840 at 645.642 kb on - strand, within PS417_02840 at 645.739 kb on + strand, within PS417_02840 at 645.740 kb on - strand, within PS417_02840 at 645.857 kb on - strand, within PS417_02840 at 646.007 kb on - strand, within PS417_02840 at 646.156 kb on + strand, within PS417_02840 at 646.316 kb on - strand, within PS417_02840 at 646.363 kb on + strand, within PS417_02840 at 646.401 kb on + strand, within PS417_02840 at 646.464 kb on - strand, within PS417_02840 at 646.489 kb on + strand, within PS417_02840 at 646.489 kb on + strand, within PS417_02840 at 646.489 kb on + strand, within PS417_02840 at 646.489 kb on + strand, within PS417_02840 at 646.489 kb on + strand at 646.602 kb on + strand, within PS417_02840 at 646.603 kb on - strand, within PS417_02840 at 646.648 kb on + strand, within PS417_02840 at 646.682 kb on - strand, within PS417_02840 at 646.937 kb on - strand, within PS417_02840 at 647.142 kb on + strand, within PS417_02840 at 647.142 kb on + strand, within PS417_02840 at 647.305 kb on + strand, within PS417_02840 at 647.305 kb on + strand, within PS417_02840 at 647.365 kb on + strand, within PS417_02840 at 647.365 kb on + strand, within PS417_02840 at 647.366 kb on - strand, within PS417_02840 at 647.366 kb on - strand, within PS417_02840 at 647.508 kb on - strand, within PS417_02840 at 647.534 kb on + strand, within PS417_02840 at 647.535 kb on - strand, within PS417_02840 at 647.661 kb on + strand, within PS417_02840 at 647.662 kb on - strand, within PS417_02840 at 647.849 kb on + strand, within PS417_02840 at 647.948 kb on - strand, within PS417_02840 at 648.208 kb on + strand, within PS417_02840 at 648.209 kb on - strand, within PS417_02840 at 648.209 kb on - strand, within PS417_02840 at 648.286 kb on + strand, within PS417_02840 at 648.287 kb on - strand, within PS417_02840 at 648.287 kb on - strand, within PS417_02840 at 648.287 kb on - strand, within PS417_02840 at 648.301 kb on + strand, within PS417_02840 at 648.302 kb on - strand, within PS417_02840 at 648.346 kb on + strand, within PS417_02840 at 648.347 kb on - strand, within PS417_02840 at 648.376 kb on + strand, within PS417_02840 at 648.376 kb on + strand, within PS417_02840 at 648.376 kb on + strand, within PS417_02840 at 648.376 kb on + strand, within PS417_02840 at 648.376 kb on + strand, within PS417_02840 at 648.376 kb on + strand, within PS417_02840 at 648.377 kb on - strand, within PS417_02840 at 648.377 kb on - strand, within PS417_02840 at 648.377 kb on - strand, within PS417_02840 at 648.580 kb on - strand, within PS417_02840 at 648.640 kb on + strand, within PS417_02840 at 648.641 kb on - strand, within PS417_02840 at 648.645 kb on - strand, within PS417_02840 at 648.645 kb on - strand, within PS417_02840 at 648.740 kb on - strand, within PS417_02840 at 648.742 kb on + strand at 648.742 kb on + strand, within PS417_02840 at 648.742 kb on + strand, within PS417_02840 at 648.743 kb on - strand, within PS417_02840 at 648.775 kb on + strand, within PS417_02840 at 648.776 kb on - strand at 648.776 kb on - strand, within PS417_02840 at 648.798 kb on - strand, within PS417_02840 at 648.964 kb on + strand at 648.964 kb on + strand at 648.964 kb on + strand at 648.964 kb on + strand at 648.991 kb on - strand at 648.993 kb on + strand at 648.994 kb on - strand at 648.994 kb on - strand at 649.050 kb on + strand at 649.103 kb on + strand at 649.104 kb on - strand at 649.234 kb on + strand at 649.234 kb on + strand at 649.235 kb on - strand at 649.235 kb on - strand at 649.239 kb on - strand at 649.312 kb on + strand at 649.607 kb on - strand at 650.182 kb on + strand at 650.417 kb on - strand, within PS417_02845 at 650.466 kb on + strand, within PS417_02845 at 650.466 kb on + strand, within PS417_02845 at 650.467 kb on - strand, within PS417_02845
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 10 remove 642,717 + PS417_02835 0.52 -2.1 642,718 - PS417_02835 0.52 -0.5 642,718 - PS417_02835 0.52 +0.1 642,802 - PS417_02835 0.58 -2.5 642,858 + PS417_02835 0.63 +0.5 642,859 - PS417_02835 0.63 -3.1 642,903 + PS417_02835 0.66 +1.2 642,903 + PS417_02835 0.66 +1.0 642,903 + PS417_02835 0.66 -0.6 642,936 + PS417_02835 0.69 +1.1 642,948 + PS417_02835 0.70 -2.0 643,541 + +1.2 643,541 + -0.6 643,541 + -1.1 643,545 + -1.5 643,545 + +2.5 643,575 + +0.2 643,576 - +0.0 643,757 + +0.6 643,757 + -1.2 643,757 + +0.4 643,757 + -1.6 643,757 + -1.4 643,758 - +0.2 643,792 + -0.6 643,793 - +0.1 643,831 + +0.7 643,832 - -1.0 643,832 - +1.0 643,832 - +0.1 643,886 + -0.9 643,922 + +1.7 643,922 + -0.7 644,021 + -2.2 644,021 + +0.0 644,098 + +1.4 644,207 - -0.7 644,207 - -0.2 644,236 + -1.6 644,236 + +0.1 644,237 - +1.4 644,332 + PS417_02840 0.12 -3.4 644,333 - PS417_02840 0.12 +1.1 644,485 + PS417_02840 0.14 +2.2 644,485 + PS417_02840 0.14 -1.2 644,486 - PS417_02840 0.14 +0.4 644,581 + PS417_02840 0.16 -0.7 644,582 - +2.7 644,725 + PS417_02840 0.18 +0.3 644,726 - PS417_02840 0.18 +0.0 644,733 + PS417_02840 0.18 +0.5 645,109 + PS417_02840 0.25 +0.9 645,129 - PS417_02840 0.25 -0.9 645,226 + PS417_02840 0.27 +1.1 645,371 - PS417_02840 0.29 +0.5 645,404 - PS417_02840 0.30 +0.4 645,404 - PS417_02840 0.30 -0.4 645,404 - PS417_02840 0.30 +0.1 645,634 - PS417_02840 0.34 -1.5 645,641 + PS417_02840 0.34 -0.3 645,641 + PS417_02840 0.34 -3.9 645,642 - PS417_02840 0.34 -0.2 645,739 + PS417_02840 0.35 +0.3 645,740 - PS417_02840 0.35 +0.4 645,857 - PS417_02840 0.37 -0.6 646,007 - PS417_02840 0.40 +1.3 646,156 + PS417_02840 0.43 -1.4 646,316 - PS417_02840 0.45 +0.1 646,363 + PS417_02840 0.46 +1.2 646,401 + PS417_02840 0.47 -1.0 646,464 - PS417_02840 0.48 +0.6 646,489 + PS417_02840 0.48 +0.3 646,489 + PS417_02840 0.48 +0.2 646,489 + PS417_02840 0.48 -2.4 646,489 + PS417_02840 0.48 +0.8 646,489 + +2.1 646,602 + PS417_02840 0.50 +2.8 646,603 - PS417_02840 0.50 -0.7 646,648 + PS417_02840 0.51 -1.2 646,682 - PS417_02840 0.51 +3.2 646,937 - PS417_02840 0.56 +1.2 647,142 + PS417_02840 0.59 +2.0 647,142 + PS417_02840 0.59 +1.6 647,305 + PS417_02840 0.62 +1.5 647,305 + PS417_02840 0.62 +1.0 647,365 + PS417_02840 0.63 -1.1 647,365 + PS417_02840 0.63 -0.6 647,366 - PS417_02840 0.63 +1.5 647,366 - PS417_02840 0.63 -2.1 647,508 - PS417_02840 0.65 -2.1 647,534 + PS417_02840 0.66 -0.1 647,535 - PS417_02840 0.66 -1.0 647,661 + PS417_02840 0.68 -0.5 647,662 - PS417_02840 0.68 +0.0 647,849 + PS417_02840 0.71 +0.1 647,948 - PS417_02840 0.73 -0.6 648,208 + PS417_02840 0.77 -1.3 648,209 - PS417_02840 0.77 +0.7 648,209 - PS417_02840 0.77 +0.7 648,286 + PS417_02840 0.79 +0.3 648,287 - PS417_02840 0.79 -1.4 648,287 - PS417_02840 0.79 +1.7 648,287 - PS417_02840 0.79 -2.3 648,301 + PS417_02840 0.79 +1.0 648,302 - PS417_02840 0.79 +1.0 648,346 + PS417_02840 0.80 -0.4 648,347 - PS417_02840 0.80 -0.5 648,376 + PS417_02840 0.80 +0.4 648,376 + PS417_02840 0.80 +2.4 648,376 + PS417_02840 0.80 +0.1 648,376 + PS417_02840 0.80 +0.5 648,376 + PS417_02840 0.80 -0.5 648,376 + PS417_02840 0.80 +2.2 648,377 - PS417_02840 0.80 +1.6 648,377 - PS417_02840 0.80 -0.9 648,377 - PS417_02840 0.80 -0.1 648,580 - PS417_02840 0.84 +0.1 648,640 + PS417_02840 0.85 +1.6 648,641 - PS417_02840 0.85 +1.5 648,645 - PS417_02840 0.85 +1.5 648,645 - PS417_02840 0.85 -0.6 648,740 - PS417_02840 0.86 +0.1 648,742 + +1.7 648,742 + PS417_02840 0.86 +0.5 648,742 + PS417_02840 0.86 +1.2 648,743 - PS417_02840 0.86 +0.1 648,775 + PS417_02840 0.87 -0.7 648,776 - -0.9 648,776 - PS417_02840 0.87 +0.1 648,798 - PS417_02840 0.87 -0.7 648,964 + -2.6 648,964 + +0.7 648,964 + +1.7 648,964 + +0.0 648,991 - +0.5 648,993 + +1.7 648,994 - -0.6 648,994 - -0.5 649,050 + -2.4 649,103 + -0.0 649,104 - +0.4 649,234 + +0.3 649,234 + -1.6 649,235 - -0.6 649,235 - +1.7 649,239 - +1.1 649,312 + -0.9 649,607 - +0.4 650,182 + +1.7 650,417 - PS417_02845 0.82 +0.2 650,466 + PS417_02845 0.87 +2.3 650,466 + PS417_02845 0.87 -0.6 650,467 - PS417_02845 0.87 +0.1
Or see this region's nucleotide sequence