Experiment: JP1 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24280 and PS417_24285 are separated by 111 nucleotides PS417_24285 and PS417_24290 are separated by 156 nucleotides PS417_24290 and PS417_24295 are separated by 15 nucleotides
PS417_24280: PS417_24280 - serine hydroxymethyltransferase, at 5,270,061 to 5,271,314
_24280
PS417_24285: PS417_24285 - GTP-binding protein, at 5,271,426 to 5,272,385
_24285
PS417_24290: PS417_24290 - hypothetical protein, at 5,272,542 to 5,272,739
_24290
PS417_24295: PS417_24295 - carbon starvation protein A, at 5,272,755 to 5,274,821
_24295
Position (kb) 5271
5272
5273 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5271.330 kb on + strand at 5271.361 kb on + strand at 5271.362 kb on - strand at 5271.551 kb on - strand, within PS417_24285 at 5271.786 kb on + strand, within PS417_24285 at 5271.786 kb on + strand, within PS417_24285 at 5271.786 kb on + strand, within PS417_24285 at 5271.787 kb on - strand, within PS417_24285 at 5271.787 kb on - strand, within PS417_24285 at 5271.787 kb on - strand, within PS417_24285 at 5272.021 kb on + strand, within PS417_24285 at 5272.021 kb on + strand, within PS417_24285 at 5272.022 kb on - strand, within PS417_24285 at 5272.151 kb on - strand, within PS417_24285 at 5272.402 kb on - strand at 5272.402 kb on - strand at 5272.455 kb on + strand at 5272.455 kb on + strand at 5272.455 kb on + strand at 5272.469 kb on + strand at 5272.469 kb on + strand at 5272.469 kb on + strand at 5272.470 kb on - strand at 5272.470 kb on - strand at 5272.470 kb on - strand at 5272.470 kb on - strand at 5272.470 kb on - strand at 5272.554 kb on - strand at 5272.610 kb on - strand, within PS417_24290 at 5272.610 kb on - strand, within PS417_24290 at 5272.646 kb on + strand, within PS417_24290 at 5272.657 kb on + strand, within PS417_24290 at 5272.657 kb on + strand, within PS417_24290 at 5272.657 kb on + strand, within PS417_24290 at 5272.658 kb on - strand, within PS417_24290 at 5272.791 kb on - strand at 5272.840 kb on + strand at 5272.840 kb on + strand at 5272.897 kb on + strand at 5272.978 kb on + strand, within PS417_24295 at 5273.093 kb on + strand, within PS417_24295 at 5273.094 kb on - strand, within PS417_24295 at 5273.095 kb on + strand, within PS417_24295
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 10 remove 5,271,330 + -0.2 5,271,361 + -1.0 5,271,362 - +0.9 5,271,551 - PS417_24285 0.13 -1.0 5,271,786 + PS417_24285 0.38 +1.7 5,271,786 + PS417_24285 0.38 -3.3 5,271,786 + PS417_24285 0.38 -1.4 5,271,787 - PS417_24285 0.38 -1.2 5,271,787 - PS417_24285 0.38 -1.0 5,271,787 - PS417_24285 0.38 -0.5 5,272,021 + PS417_24285 0.62 +1.6 5,272,021 + PS417_24285 0.62 -0.8 5,272,022 - PS417_24285 0.62 -1.6 5,272,151 - PS417_24285 0.76 +0.1 5,272,402 - -0.1 5,272,402 - -0.0 5,272,455 + -0.5 5,272,455 + +1.1 5,272,455 + -0.0 5,272,469 + -0.3 5,272,469 + -0.3 5,272,469 + +0.7 5,272,470 - +0.8 5,272,470 - -0.8 5,272,470 - -0.3 5,272,470 - -1.0 5,272,470 - +0.6 5,272,554 - -2.0 5,272,610 - PS417_24290 0.34 -2.5 5,272,610 - PS417_24290 0.34 -1.4 5,272,646 + PS417_24290 0.53 -1.1 5,272,657 + PS417_24290 0.58 -0.6 5,272,657 + PS417_24290 0.58 +0.0 5,272,657 + PS417_24290 0.58 +1.0 5,272,658 - PS417_24290 0.59 -0.0 5,272,791 - +1.6 5,272,840 + +1.9 5,272,840 + -0.8 5,272,897 + -1.0 5,272,978 + PS417_24295 0.11 -0.0 5,273,093 + PS417_24295 0.16 +0.0 5,273,094 - PS417_24295 0.16 -2.4 5,273,095 + PS417_24295 0.16 +1.4
Or see this region's nucleotide sequence