Experiment: JP1 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23845 and PS417_23850 overlap by 1 nucleotides PS417_23850 and PS417_23855 overlap by 4 nucleotides
PS417_23845: PS417_23845 - hemin ABC transporter ATP-binding protein, at 5,160,253 to 5,161,020
_23845
PS417_23850: PS417_23850 - ABC transporter permease, at 5,161,020 to 5,162,057
_23850
PS417_23855: PS417_23855 - ABC transporter substrate-binding protein, at 5,162,054 to 5,162,932
_23855
Position (kb) 5161
5162
5163 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5160.025 kb on - strand at 5160.169 kb on + strand at 5160.169 kb on + strand at 5160.170 kb on - strand at 5160.170 kb on - strand at 5160.226 kb on + strand at 5160.230 kb on + strand at 5160.230 kb on + strand at 5160.230 kb on + strand at 5160.230 kb on + strand at 5160.230 kb on + strand at 5160.230 kb on + strand at 5160.232 kb on + strand at 5160.319 kb on + strand at 5160.319 kb on + strand at 5160.320 kb on - strand at 5160.320 kb on - strand at 5160.320 kb on - strand at 5160.360 kb on + strand, within PS417_23845 at 5160.630 kb on - strand, within PS417_23845 at 5160.897 kb on + strand, within PS417_23845 at 5160.898 kb on - strand, within PS417_23845 at 5160.898 kb on - strand, within PS417_23845 at 5160.898 kb on - strand, within PS417_23845 at 5160.973 kb on + strand at 5161.038 kb on + strand at 5161.045 kb on + strand at 5161.307 kb on + strand, within PS417_23850 at 5161.307 kb on + strand, within PS417_23850 at 5161.442 kb on - strand, within PS417_23850 at 5161.442 kb on - strand, within PS417_23850 at 5161.442 kb on - strand, within PS417_23850 at 5161.510 kb on + strand, within PS417_23850 at 5161.514 kb on + strand, within PS417_23850 at 5161.626 kb on - strand, within PS417_23850 at 5161.666 kb on + strand, within PS417_23850 at 5161.666 kb on + strand, within PS417_23850 at 5161.667 kb on - strand, within PS417_23850 at 5161.821 kb on + strand, within PS417_23850 at 5161.822 kb on - strand, within PS417_23850 at 5161.940 kb on + strand, within PS417_23850 at 5162.068 kb on + strand at 5162.068 kb on + strand at 5162.069 kb on - strand at 5162.732 kb on - strand, within PS417_23855 at 5162.843 kb on + strand, within PS417_23855 at 5162.932 kb on + strand at 5162.933 kb on - strand at 5162.933 kb on - strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.988 kb on - strand at 5162.988 kb on - strand at 5163.006 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 10 remove 5,160,025 - +3.8 5,160,169 + +2.7 5,160,169 + -1.6 5,160,170 - +1.0 5,160,170 - +1.6 5,160,226 + +1.4 5,160,230 + +0.4 5,160,230 + +0.5 5,160,230 + +0.9 5,160,230 + -2.0 5,160,230 + +0.2 5,160,230 + -1.0 5,160,232 + -2.2 5,160,319 + +1.5 5,160,319 + -1.7 5,160,320 - +2.0 5,160,320 - +1.9 5,160,320 - -0.1 5,160,360 + PS417_23845 0.14 +0.2 5,160,630 - PS417_23845 0.49 -1.8 5,160,897 + PS417_23845 0.84 -0.8 5,160,898 - PS417_23845 0.84 +0.0 5,160,898 - PS417_23845 0.84 -0.5 5,160,898 - PS417_23845 0.84 -1.8 5,160,973 + -0.0 5,161,038 + -2.6 5,161,045 + -1.5 5,161,307 + PS417_23850 0.28 -0.9 5,161,307 + PS417_23850 0.28 +1.5 5,161,442 - PS417_23850 0.41 +1.4 5,161,442 - PS417_23850 0.41 -0.1 5,161,442 - PS417_23850 0.41 -0.7 5,161,510 + PS417_23850 0.47 +0.4 5,161,514 + PS417_23850 0.48 -0.3 5,161,626 - PS417_23850 0.58 -0.3 5,161,666 + PS417_23850 0.62 -0.8 5,161,666 + PS417_23850 0.62 -0.2 5,161,667 - PS417_23850 0.62 +0.5 5,161,821 + PS417_23850 0.77 +1.8 5,161,822 - PS417_23850 0.77 +0.0 5,161,940 + PS417_23850 0.89 -0.2 5,162,068 + +0.5 5,162,068 + +0.4 5,162,069 - +0.5 5,162,732 - PS417_23855 0.77 +2.1 5,162,843 + PS417_23855 0.90 -0.8 5,162,932 + +0.6 5,162,933 - -0.0 5,162,933 - +0.5 5,162,987 + +0.1 5,162,987 + +1.3 5,162,987 + -0.1 5,162,987 + -0.2 5,162,987 + -0.3 5,162,987 + +2.8 5,162,987 + -1.3 5,162,987 + -0.2 5,162,988 - +0.1 5,162,988 - +0.5 5,163,006 + -0.3
Or see this region's nucleotide sequence