Strain Fitness in Pseudomonas simiae WCS417 around PS417_17235

Experiment: JP1 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17230 and PS417_17235 are separated by 112 nucleotidesPS417_17235 and PS417_17240 are separated by 91 nucleotides PS417_17230: PS417_17230 - Clp protease ATP-binding protein, at 3,765,321 to 3,766,604 _17230 PS417_17235: PS417_17235 - Clp protease ClpP, at 3,766,717 to 3,767,352 _17235 PS417_17240: PS417_17240 - trigger factor, at 3,767,444 to 3,768,754 _17240 Position (kb) 3766 3767 3768Strain fitness (log2 ratio) -2 -1 0 1 2at 3766.715 kb on + strandat 3766.715 kb on + strandat 3766.716 kb on - strandat 3767.374 kb on - strandat 3767.395 kb on - strandat 3767.593 kb on - strand, within PS417_17240at 3767.593 kb on - strand, within PS417_17240at 3768.311 kb on - strand, within PS417_17240

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 10
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3,766,715 + +1.2
3,766,715 + -0.1
3,766,716 - +2.1
3,767,374 - +0.6
3,767,395 - -0.2
3,767,593 - PS417_17240 0.11 -1.0
3,767,593 - PS417_17240 0.11 -2.2
3,768,311 - PS417_17240 0.66 -0.8

Or see this region's nucleotide sequence