Strain Fitness in Pseudomonas simiae WCS417 around PS417_04965

Experiment: Only library

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04955 and PS417_04960 are separated by 82 nucleotidesPS417_04960 and PS417_04965 are separated by 46 nucleotidesPS417_04965 and PS417_04970 are separated by 41 nucleotides PS417_04955: PS417_04955 - hypothetical protein, at 1,103,904 to 1,104,527 _04955 PS417_04960: PS417_04960 - hypothetical protein, at 1,104,610 to 1,105,236 _04960 PS417_04965: PS417_04965 - hypothetical protein, at 1,105,283 to 1,105,903 _04965 PS417_04970: PS417_04970 - hypothetical protein, at 1,105,945 to 1,106,574 _04970 Position (kb) 1105 1106Strain fitness (log2 ratio) -2 -1 0 1at 1104.410 kb on + strand, within PS417_04955at 1104.423 kb on + strand, within PS417_04955at 1104.569 kb on - strandat 1104.617 kb on + strandat 1104.617 kb on + strandat 1104.804 kb on - strand, within PS417_04960at 1104.804 kb on - strand, within PS417_04960at 1105.261 kb on - strandat 1105.266 kb on + strandat 1105.266 kb on + strandat 1105.267 kb on - strandat 1105.267 kb on - strandat 1105.267 kb on - strandat 1105.786 kb on + strand, within PS417_04965at 1105.787 kb on - strand, within PS417_04965at 1105.893 kb on + strandat 1105.893 kb on + strandat 1105.894 kb on - strandat 1105.894 kb on - strandat 1105.894 kb on - strandat 1105.894 kb on - strandat 1105.894 kb on - strandat 1105.897 kb on + strandat 1105.898 kb on - strandat 1105.898 kb on - strandat 1105.953 kb on - strandat 1105.953 kb on - strandat 1105.953 kb on - strandat 1106.276 kb on + strand, within PS417_04970at 1106.720 kb on - strandat 1106.728 kb on + strandat 1106.729 kb on - strandat 1106.781 kb on + strandat 1106.810 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Only library
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1,104,410 + PS417_04955 0.81 -0.8
1,104,423 + PS417_04955 0.83 -2.4
1,104,569 - -1.3
1,104,617 + -0.7
1,104,617 + -0.4
1,104,804 - PS417_04960 0.31 -2.3
1,104,804 - PS417_04960 0.31 +0.7
1,105,261 - -0.2
1,105,266 + -0.0
1,105,266 + +0.6
1,105,267 - -1.7
1,105,267 - -1.7
1,105,267 - -0.0
1,105,786 + PS417_04965 0.81 -0.9
1,105,787 - PS417_04965 0.81 -1.4
1,105,893 + -1.3
1,105,893 + -1.6
1,105,894 - -0.0
1,105,894 - -0.8
1,105,894 - +0.2
1,105,894 - +0.6
1,105,894 - -1.1
1,105,897 + +0.3
1,105,898 - -0.0
1,105,898 - +0.2
1,105,953 - -0.9
1,105,953 - +1.0
1,105,953 - -0.8
1,106,276 + PS417_04970 0.53 +0.7
1,106,720 - -1.6
1,106,728 + -1.4
1,106,729 - -0.4
1,106,781 + -1.4
1,106,810 + -1.0

Or see this region's nucleotide sequence