Strain Fitness in Pseudomonas simiae WCS417 around PS417_22480

Experiment: Only library

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22470 and PS417_22475 are separated by 168 nucleotidesPS417_22475 and PS417_22480 are separated by 180 nucleotidesPS417_22480 and PS417_22485 are separated by 415 nucleotides PS417_22470: PS417_22470 - FmdB family transcriptional regulator, at 4,865,900 to 4,866,121 _22470 PS417_22475: PS417_22475 - hypothetical protein, at 4,866,290 to 4,866,622 _22475 PS417_22480: PS417_22480 - ferritin, at 4,866,803 to 4,867,276 _22480 PS417_22485: PS417_22485 - cold-shock protein, at 4,867,692 to 4,868,294 _22485 Position (kb) 4866 4867 4868Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4865.850 kb on - strandat 4865.850 kb on - strandat 4865.850 kb on - strandat 4865.855 kb on - strandat 4865.855 kb on - strandat 4865.855 kb on - strandat 4866.105 kb on + strandat 4866.105 kb on + strandat 4866.106 kb on - strandat 4866.106 kb on - strandat 4866.106 kb on - strandat 4866.111 kb on + strandat 4866.112 kb on - strandat 4866.112 kb on - strandat 4866.112 kb on - strandat 4866.112 kb on - strandat 4866.112 kb on - strandat 4866.112 kb on - strandat 4866.203 kb on - strandat 4866.203 kb on - strandat 4866.203 kb on - strandat 4866.205 kb on - strandat 4866.399 kb on + strand, within PS417_22475at 4866.400 kb on - strand, within PS417_22475at 4866.400 kb on - strand, within PS417_22475at 4866.455 kb on - strand, within PS417_22475at 4866.455 kb on - strand, within PS417_22475at 4866.462 kb on + strand, within PS417_22475at 4866.462 kb on + strand, within PS417_22475at 4866.462 kb on + strand, within PS417_22475at 4866.569 kb on + strand, within PS417_22475at 4866.569 kb on + strand, within PS417_22475at 4866.570 kb on - strand, within PS417_22475at 4866.575 kb on - strand, within PS417_22475at 4866.622 kb on + strandat 4866.622 kb on + strandat 4866.622 kb on + strandat 4866.622 kb on + strandat 4866.622 kb on + strandat 4866.622 kb on + strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.623 kb on - strandat 4866.734 kb on + strandat 4866.956 kb on + strand, within PS417_22480at 4866.957 kb on - strand, within PS417_22480at 4866.957 kb on - strand, within PS417_22480at 4867.026 kb on + strand, within PS417_22480at 4867.027 kb on - strand, within PS417_22480at 4867.035 kb on + strand, within PS417_22480at 4867.036 kb on - strand, within PS417_22480at 4867.036 kb on - strand, within PS417_22480at 4867.110 kb on + strand, within PS417_22480at 4867.111 kb on - strand, within PS417_22480at 4867.174 kb on + strand, within PS417_22480at 4867.189 kb on - strand, within PS417_22480at 4867.193 kb on + strand, within PS417_22480at 4867.193 kb on + strand, within PS417_22480at 4867.193 kb on + strand, within PS417_22480at 4867.193 kb on + strand, within PS417_22480at 4867.193 kb on + strand, within PS417_22480at 4867.193 kb on + strand, within PS417_22480at 4867.193 kb on + strand, within PS417_22480at 4867.194 kb on - strand, within PS417_22480at 4867.194 kb on - strand, within PS417_22480at 4867.194 kb on - strand, within PS417_22480at 4867.194 kb on - strand, within PS417_22480at 4867.194 kb on - strand, within PS417_22480at 4867.194 kb on - strand, within PS417_22480at 4867.194 kb on - strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strandat 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.197 kb on + strand, within PS417_22480at 4867.198 kb on - strand, within PS417_22480at 4867.198 kb on - strand, within PS417_22480at 4867.198 kb on - strand, within PS417_22480at 4867.198 kb on - strand, within PS417_22480at 4867.198 kb on - strand, within PS417_22480at 4867.198 kb on - strand, within PS417_22480at 4867.198 kb on - strand, within PS417_22480at 4867.280 kb on + strandat 4867.329 kb on - strandat 4867.674 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Only library
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4,865,850 - -0.0
4,865,850 - +1.2
4,865,850 - +1.6
4,865,855 - -2.8
4,865,855 - +1.1
4,865,855 - -0.4
4,866,105 + -0.0
4,866,105 + -1.4
4,866,106 - -1.4
4,866,106 - -2.8
4,866,106 - -1.9
4,866,111 + +1.1
4,866,112 - -0.2
4,866,112 - -0.3
4,866,112 - +0.6
4,866,112 - -0.0
4,866,112 - +0.4
4,866,112 - +0.9
4,866,203 - -0.6
4,866,203 - -0.1
4,866,203 - +0.3
4,866,205 - -0.9
4,866,399 + PS417_22475 0.33 -0.2
4,866,400 - PS417_22475 0.33 +0.7
4,866,400 - PS417_22475 0.33 -0.1
4,866,455 - PS417_22475 0.50 -0.3
4,866,455 - PS417_22475 0.50 -2.3
4,866,462 + PS417_22475 0.52 +1.2
4,866,462 + PS417_22475 0.52 -1.6
4,866,462 + PS417_22475 0.52 +0.4
4,866,569 + PS417_22475 0.84 +0.3
4,866,569 + PS417_22475 0.84 +0.4
4,866,570 - PS417_22475 0.84 +0.3
4,866,575 - PS417_22475 0.86 -1.3
4,866,622 + +0.3
4,866,622 + +1.6
4,866,622 + -0.9
4,866,622 + +0.6
4,866,622 + -0.8
4,866,622 + -1.6
4,866,623 - +1.0
4,866,623 - -2.1
4,866,623 - +0.2
4,866,623 - -0.3
4,866,623 - +1.4
4,866,623 - -1.6
4,866,623 - +0.2
4,866,623 - -0.4
4,866,623 - +2.4
4,866,734 + -0.6
4,866,956 + PS417_22480 0.32 -0.0
4,866,957 - PS417_22480 0.32 -1.8
4,866,957 - PS417_22480 0.32 -0.4
4,867,026 + PS417_22480 0.47 +1.8
4,867,027 - PS417_22480 0.47 +1.3
4,867,035 + PS417_22480 0.49 -0.3
4,867,036 - PS417_22480 0.49 -3.4
4,867,036 - PS417_22480 0.49 -0.6
4,867,110 + PS417_22480 0.65 -0.4
4,867,111 - PS417_22480 0.65 +0.3
4,867,174 + PS417_22480 0.78 +2.0
4,867,189 - PS417_22480 0.81 +1.6
4,867,193 + PS417_22480 0.82 +0.8
4,867,193 + PS417_22480 0.82 +0.9
4,867,193 + PS417_22480 0.82 -2.8
4,867,193 + PS417_22480 0.82 +0.1
4,867,193 + PS417_22480 0.82 +2.1
4,867,193 + PS417_22480 0.82 +0.4
4,867,193 + PS417_22480 0.82 +1.4
4,867,194 - PS417_22480 0.82 -1.2
4,867,194 - PS417_22480 0.82 -0.4
4,867,194 - PS417_22480 0.82 +2.1
4,867,194 - PS417_22480 0.82 -0.5
4,867,194 - PS417_22480 0.82 -0.4
4,867,194 - PS417_22480 0.82 -0.8
4,867,194 - PS417_22480 0.82 -0.2
4,867,197 + PS417_22480 0.83 +0.4
4,867,197 + PS417_22480 0.83 +1.1
4,867,197 + PS417_22480 0.83 +1.7
4,867,197 + PS417_22480 0.83 +1.0
4,867,197 + PS417_22480 0.83 -1.0
4,867,197 + PS417_22480 0.83 +0.6
4,867,197 + PS417_22480 0.83 +0.6
4,867,197 + PS417_22480 0.83 +0.1
4,867,197 + PS417_22480 0.83 +0.8
4,867,197 + PS417_22480 0.83 +0.7
4,867,197 + PS417_22480 0.83 -0.1
4,867,197 + PS417_22480 0.83 -0.4
4,867,197 + PS417_22480 0.83 +0.5
4,867,197 + PS417_22480 0.83 +0.4
4,867,197 + PS417_22480 0.83 +2.1
4,867,197 + +1.6
4,867,197 + PS417_22480 0.83 +0.5
4,867,197 + PS417_22480 0.83 +1.0
4,867,197 + PS417_22480 0.83 +1.5
4,867,198 - PS417_22480 0.83 -0.0
4,867,198 - PS417_22480 0.83 +1.2
4,867,198 - PS417_22480 0.83 -0.2
4,867,198 - PS417_22480 0.83 -0.3
4,867,198 - PS417_22480 0.83 +1.1
4,867,198 - PS417_22480 0.83 -0.7
4,867,198 - PS417_22480 0.83 +1.1
4,867,280 + +0.7
4,867,329 - +0.3
4,867,674 + +0.2

Or see this region's nucleotide sequence