Strain Fitness in Pseudomonas simiae WCS417 around PS417_22315

Experiment: Only library

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_22310 and PS417_22315 are separated by 114 nucleotidesPS417_22315 and PS417_22320 overlap by 4 nucleotides PS417_22310: PS417_22310 - CAIB/BAIF family CoA transferase, at 4,831,591 to 4,832,940 _22310 PS417_22315: PS417_22315 - DNA-3-methyladenine glycosylase, at 4,833,055 to 4,833,918 _22315 PS417_22320: PS417_22320 - amino acid APC transporter, at 4,833,915 to 4,835,342 _22320 Position (kb) 4833 4834Strain fitness (log2 ratio) -3 -2 -1 0 1at 4832.192 kb on + strand, within PS417_22310at 4832.192 kb on + strand, within PS417_22310at 4832.192 kb on + strand, within PS417_22310at 4832.300 kb on + strand, within PS417_22310at 4832.444 kb on - strand, within PS417_22310at 4832.526 kb on + strand, within PS417_22310at 4833.053 kb on + strandat 4833.099 kb on - strandat 4833.246 kb on - strand, within PS417_22315at 4833.246 kb on - strand, within PS417_22315at 4833.246 kb on - strand, within PS417_22315at 4833.246 kb on - strand, within PS417_22315at 4833.493 kb on + strand, within PS417_22315at 4833.906 kb on - strandat 4833.937 kb on + strandat 4833.937 kb on + strandat 4833.937 kb on + strandat 4833.937 kb on + strandat 4833.937 kb on + strandat 4833.938 kb on - strandat 4833.938 kb on - strandat 4834.063 kb on + strand, within PS417_22320at 4834.063 kb on + strand, within PS417_22320at 4834.064 kb on - strand, within PS417_22320at 4834.064 kb on - strand, within PS417_22320at 4834.064 kb on - strand, within PS417_22320at 4834.064 kb on - strand, within PS417_22320at 4834.064 kb on - strand, within PS417_22320at 4834.064 kb on - strand, within PS417_22320at 4834.064 kb on - strand, within PS417_22320at 4834.064 kb on - strand, within PS417_22320at 4834.088 kb on - strand, within PS417_22320at 4834.279 kb on + strand, within PS417_22320at 4834.280 kb on - strand, within PS417_22320at 4834.684 kb on + strand, within PS417_22320at 4834.685 kb on - strand, within PS417_22320at 4834.838 kb on + strand, within PS417_22320at 4834.839 kb on - strand, within PS417_22320

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Only library
remove
4,832,192 + PS417_22310 0.45 -1.3
4,832,192 + PS417_22310 0.45 -1.9
4,832,192 + PS417_22310 0.45 -0.2
4,832,300 + PS417_22310 0.53 -3.6
4,832,444 - PS417_22310 0.63 -0.3
4,832,526 + PS417_22310 0.69 -0.2
4,833,053 + -1.2
4,833,099 - +0.1
4,833,246 - PS417_22315 0.22 +1.0
4,833,246 - PS417_22315 0.22 +0.4
4,833,246 - PS417_22315 0.22 -1.8
4,833,246 - PS417_22315 0.22 +0.2
4,833,493 + PS417_22315 0.51 +1.2
4,833,906 - +0.5
4,833,937 + -0.2
4,833,937 + +0.5
4,833,937 + -0.5
4,833,937 + -0.3
4,833,937 + -1.5
4,833,938 - -0.7
4,833,938 - +1.5
4,834,063 + PS417_22320 0.10 -0.4
4,834,063 + PS417_22320 0.10 -0.9
4,834,064 - PS417_22320 0.10 -2.9
4,834,064 - PS417_22320 0.10 -0.0
4,834,064 - PS417_22320 0.10 +1.6
4,834,064 - PS417_22320 0.10 -1.0
4,834,064 - PS417_22320 0.10 -0.2
4,834,064 - PS417_22320 0.10 +0.4
4,834,064 - PS417_22320 0.10 -1.4
4,834,064 - PS417_22320 0.10 +0.2
4,834,088 - PS417_22320 0.12 -1.0
4,834,279 + PS417_22320 0.25 -0.6
4,834,280 - PS417_22320 0.26 +1.6
4,834,684 + PS417_22320 0.54 +0.2
4,834,685 - PS417_22320 0.54 -0.0
4,834,838 + PS417_22320 0.65 -0.8
4,834,839 - PS417_22320 0.65 -0.4

Or see this region's nucleotide sequence