Strain Fitness in Pseudomonas simiae WCS417 around PS417_21865

Experiment: Only library

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21855 and PS417_21860 overlap by 4 nucleotidesPS417_21860 and PS417_21865 overlap by 4 nucleotidesPS417_21865 and PS417_21870 are separated by 232 nucleotides PS417_21855: PS417_21855 - hypothetical protein, at 4,745,409 to 4,746,110 _21855 PS417_21860: PS417_21860 - hypothetical protein, at 4,746,107 to 4,746,430 _21860 PS417_21865: PS417_21865 - hypothetical protein, at 4,746,427 to 4,746,750 _21865 PS417_21870: PS417_21870 - glycerophosphodiester phosphodiesterase, at 4,746,983 to 4,748,110 _21870 Position (kb) 4746 4747Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4745.448 kb on + strandat 4745.530 kb on + strand, within PS417_21855at 4745.608 kb on - strand, within PS417_21855at 4745.860 kb on - strand, within PS417_21855at 4745.978 kb on - strandat 4746.134 kb on + strandat 4746.134 kb on + strandat 4746.135 kb on - strandat 4746.135 kb on - strandat 4746.138 kb on - strandat 4746.138 kb on - strandat 4746.148 kb on - strand, within PS417_21860at 4746.480 kb on + strandat 4746.480 kb on + strand, within PS417_21865at 4746.481 kb on - strand, within PS417_21865at 4746.481 kb on - strand, within PS417_21865at 4746.482 kb on + strand, within PS417_21865at 4746.482 kb on + strand, within PS417_21865at 4746.668 kb on + strand, within PS417_21865at 4746.669 kb on - strand, within PS417_21865at 4746.753 kb on + strandat 4746.959 kb on + strandat 4746.960 kb on - strandat 4746.982 kb on + strandat 4746.983 kb on - strandat 4747.194 kb on - strand, within PS417_21870at 4747.231 kb on - strand, within PS417_21870at 4747.231 kb on - strand, within PS417_21870

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Per-strain Table

Position Strand Gene LocusTag Fraction Only library
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4,745,448 + -1.9
4,745,530 + PS417_21855 0.17 -0.2
4,745,608 - PS417_21855 0.28 -0.4
4,745,860 - PS417_21855 0.64 -0.9
4,745,978 - +0.5
4,746,134 + +0.4
4,746,134 + -0.3
4,746,135 - -0.8
4,746,135 - -1.2
4,746,138 - +0.2
4,746,138 - +0.7
4,746,148 - PS417_21860 0.13 -0.7
4,746,480 + +3.1
4,746,480 + PS417_21865 0.16 +1.4
4,746,481 - PS417_21865 0.17 -0.2
4,746,481 - PS417_21865 0.17 +0.3
4,746,482 + PS417_21865 0.17 -0.5
4,746,482 + PS417_21865 0.17 +1.9
4,746,668 + PS417_21865 0.74 -0.7
4,746,669 - PS417_21865 0.75 +2.1
4,746,753 + +0.2
4,746,959 + -0.7
4,746,960 - -0.2
4,746,982 + -0.1
4,746,983 - -0.1
4,747,194 - PS417_21870 0.19 +1.5
4,747,231 - PS417_21870 0.22 -2.1
4,747,231 - PS417_21870 0.22 +0.1

Or see this region's nucleotide sequence