Strain Fitness in Pseudomonas simiae WCS417 around PS417_19080

Experiment: Only library

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19075 and PS417_19080 are separated by 298 nucleotidesPS417_19080 and PS417_19085 are separated by 454 nucleotidesPS417_19085 and PS417_19090 overlap by 14 nucleotidesPS417_19090 and PS417_19095 overlap by 1 nucleotides PS417_19075: PS417_19075 - ABC transporter ATP-binding protein, at 4,126,315 to 4,127,646 _19075 PS417_19080: PS417_19080 - tRNA-Asn, at 4,127,945 to 4,128,017 _19080 PS417_19085: PS417_19085 - hypothetical protein, at 4,128,472 to 4,128,705 _19085 PS417_19090: PS417_19090 - hypothetical protein, at 4,128,692 to 4,128,880 _19090 PS417_19095: PS417_19095 - hypothetical protein, at 4,128,880 to 4,129,164 _19095 Position (kb) 4127 4128 4129Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4127.017 kb on + strand, within PS417_19075at 4127.073 kb on + strand, within PS417_19075at 4127.074 kb on - strand, within PS417_19075at 4127.080 kb on + strand, within PS417_19075at 4127.097 kb on + strand, within PS417_19075at 4127.097 kb on + strand, within PS417_19075at 4127.098 kb on - strand, within PS417_19075at 4127.207 kb on + strandat 4127.207 kb on + strand, within PS417_19075at 4127.207 kb on + strand, within PS417_19075at 4127.318 kb on + strand, within PS417_19075at 4127.319 kb on - strand, within PS417_19075at 4127.454 kb on + strand, within PS417_19075at 4127.500 kb on - strand, within PS417_19075at 4127.539 kb on - strandat 4127.541 kb on - strandat 4127.650 kb on + strandat 4127.651 kb on - strandat 4127.796 kb on + strandat 4127.796 kb on + strandat 4127.941 kb on + strandat 4128.056 kb on + strandat 4128.168 kb on - strandat 4128.258 kb on + strandat 4128.368 kb on + strandat 4128.368 kb on + strandat 4128.509 kb on + strandat 4128.514 kb on - strand, within PS417_19085at 4128.516 kb on - strand, within PS417_19085at 4128.568 kb on + strand, within PS417_19085at 4128.569 kb on - strand, within PS417_19085at 4128.617 kb on - strand, within PS417_19085at 4128.650 kb on - strand, within PS417_19085at 4128.694 kb on - strandat 4128.698 kb on - strandat 4128.737 kb on - strand, within PS417_19090at 4128.756 kb on + strand, within PS417_19090at 4128.757 kb on - strand, within PS417_19090at 4128.795 kb on - strand, within PS417_19090at 4128.920 kb on + strand, within PS417_19095at 4128.926 kb on - strand, within PS417_19095

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Per-strain Table

Position Strand Gene LocusTag Fraction Only library
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4,127,017 + PS417_19075 0.53 +1.3
4,127,073 + PS417_19075 0.57 -0.3
4,127,074 - PS417_19075 0.57 +1.1
4,127,080 + PS417_19075 0.57 +0.3
4,127,097 + PS417_19075 0.59 -1.8
4,127,097 + PS417_19075 0.59 -0.4
4,127,098 - PS417_19075 0.59 +0.4
4,127,207 + +0.5
4,127,207 + PS417_19075 0.67 -0.3
4,127,207 + PS417_19075 0.67 -0.8
4,127,318 + PS417_19075 0.75 -1.2
4,127,319 - PS417_19075 0.75 +0.2
4,127,454 + PS417_19075 0.86 -0.2
4,127,500 - PS417_19075 0.89 +0.2
4,127,539 - +0.1
4,127,541 - -0.4
4,127,650 + -0.6
4,127,651 - +0.4
4,127,796 + +1.1
4,127,796 + +0.7
4,127,941 + +0.9
4,128,056 + -0.1
4,128,168 - -0.0
4,128,258 + +1.1
4,128,368 + +1.1
4,128,368 + -1.0
4,128,509 + +3.5
4,128,514 - PS417_19085 0.18 +0.8
4,128,516 - PS417_19085 0.19 -2.0
4,128,568 + PS417_19085 0.41 -0.5
4,128,569 - PS417_19085 0.41 -0.3
4,128,617 - PS417_19085 0.62 -0.4
4,128,650 - PS417_19085 0.76 -2.3
4,128,694 - -0.1
4,128,698 - +0.2
4,128,737 - PS417_19090 0.24 -1.3
4,128,756 + PS417_19090 0.34 +1.5
4,128,757 - PS417_19090 0.34 +0.1
4,128,795 - PS417_19090 0.54 -0.1
4,128,920 + PS417_19095 0.14 +1.5
4,128,926 - PS417_19095 0.16 +2.2

Or see this region's nucleotide sequence