Strain Fitness in Pseudomonas simiae WCS417 around PS417_13610

Experiment: Only library

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13600 and PS417_13605 overlap by 4 nucleotidesPS417_13605 and PS417_13610 overlap by 14 nucleotidesPS417_13610 and PS417_13615 overlap by 4 nucleotides PS417_13600: PS417_13600 - hypothetical protein, at 2,995,163 to 2,995,807 _13600 PS417_13605: PS417_13605 - short-chain dehydrogenase, at 2,995,804 to 2,996,613 _13605 PS417_13610: PS417_13610 - long-chain fatty acid--CoA ligase, at 2,996,600 to 2,997,274 _13610 PS417_13615: PS417_13615 - long-chain acyl-CoA synthetase, at 2,997,271 to 2,998,749 _13615 Position (kb) 2996 2997 2998Strain fitness (log2 ratio) -1 0 1 2at 2995.689 kb on + strand, within PS417_13600at 2995.689 kb on + strand, within PS417_13600at 2995.689 kb on + strand, within PS417_13600at 2995.940 kb on + strand, within PS417_13605at 2996.090 kb on - strand, within PS417_13605at 2996.165 kb on + strand, within PS417_13605at 2996.198 kb on + strand, within PS417_13605at 2996.198 kb on + strand, within PS417_13605at 2996.198 kb on + strand, within PS417_13605at 2996.199 kb on - strand, within PS417_13605at 2996.199 kb on - strand, within PS417_13605at 2996.323 kb on + strand, within PS417_13605at 2996.323 kb on + strand, within PS417_13605at 2996.658 kb on + strandat 2996.659 kb on - strandat 2996.784 kb on + strand, within PS417_13610at 2996.922 kb on + strand, within PS417_13610at 2996.923 kb on - strand, within PS417_13610at 2996.923 kb on - strand, within PS417_13610at 2996.929 kb on - strand, within PS417_13610at 2996.929 kb on - strand, within PS417_13610at 2996.978 kb on - strand, within PS417_13610at 2996.978 kb on - strand, within PS417_13610at 2997.142 kb on - strand, within PS417_13610

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Per-strain Table

Position Strand Gene LocusTag Fraction Only library
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2,995,689 + PS417_13600 0.82 -0.6
2,995,689 + PS417_13600 0.82 +0.6
2,995,689 + PS417_13600 0.82 -0.8
2,995,940 + PS417_13605 0.17 +0.7
2,996,090 - PS417_13605 0.35 +1.1
2,996,165 + PS417_13605 0.45 +1.4
2,996,198 + PS417_13605 0.49 -0.3
2,996,198 + PS417_13605 0.49 +0.3
2,996,198 + PS417_13605 0.49 +1.4
2,996,199 - PS417_13605 0.49 +0.5
2,996,199 - PS417_13605 0.49 +0.6
2,996,323 + PS417_13605 0.64 +0.3
2,996,323 + PS417_13605 0.64 -0.8
2,996,658 + +1.0
2,996,659 - -0.7
2,996,784 + PS417_13610 0.27 +1.8
2,996,922 + PS417_13610 0.48 +0.7
2,996,923 - PS417_13610 0.48 +0.2
2,996,923 - PS417_13610 0.48 -0.8
2,996,929 - PS417_13610 0.49 -1.3
2,996,929 - PS417_13610 0.49 -1.0
2,996,978 - PS417_13610 0.56 +1.4
2,996,978 - PS417_13610 0.56 +1.4
2,997,142 - PS417_13610 0.80 +0.8

Or see this region's nucleotide sequence