Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0564 and PP_0565 are separated by 2 nucleotides PP_0565 and PP_0566 are separated by 239 nucleotides PP_0566 and PP_0567 are separated by 150 nucleotides
PP_0564: PP_0564 - conserved protein of unknown function, at 656,569 to 657,657
_0564
PP_0565: PP_0565 - putative enzyme, at 657,660 to 658,193
_0565
PP_0566: PP_0566 - translation-related factor, at 658,433 to 658,804
_0566
PP_0567: PP_0567 - Biosynthetic arginine decarboxylase, at 658,955 to 660,868
_0567
Position (kb) 658
659 Strain fitness (log2 ratio) -1
0
1
2 at 657.599 kb on - strand at 657.665 kb on + strand at 657.665 kb on + strand at 657.743 kb on - strand, within PP_0565 at 657.838 kb on + strand, within PP_0565 at 657.848 kb on + strand, within PP_0565 at 657.876 kb on + strand, within PP_0565 at 658.000 kb on - strand, within PP_0565 at 658.039 kb on - strand, within PP_0565 at 658.086 kb on - strand, within PP_0565 at 658.143 kb on + strand at 658.144 kb on - strand at 658.144 kb on - strand at 658.176 kb on + strand at 658.176 kb on + strand at 658.176 kb on + strand at 658.192 kb on - strand at 658.192 kb on - strand at 658.279 kb on + strand at 658.296 kb on + strand at 658.296 kb on + strand at 658.297 kb on - strand at 658.302 kb on + strand at 658.479 kb on - strand, within PP_0566 at 658.838 kb on - strand at 658.862 kb on + strand at 658.863 kb on - strand at 658.863 kb on - strand at 658.899 kb on + strand at 658.938 kb on - strand at 658.938 kb on - strand at 658.938 kb on - strand at 658.941 kb on + strand at 658.941 kb on + strand at 658.941 kb on + strand at 658.941 kb on + strand at 658.942 kb on - strand at 658.942 kb on - strand at 658.942 kb on - strand at 658.942 kb on - strand at 658.942 kb on - strand at 658.942 kb on - strand at 658.942 kb on - strand at 658.988 kb on - strand at 658.988 kb on - strand at 659.021 kb on + strand at 659.022 kb on - strand at 659.173 kb on - strand, within PP_0567 at 659.249 kb on + strand, within PP_0567 at 659.261 kb on + strand, within PP_0567 at 659.261 kb on + strand, within PP_0567 at 659.261 kb on + strand, within PP_0567 at 659.262 kb on - strand, within PP_0567 at 659.423 kb on + strand, within PP_0567 at 659.423 kb on + strand, within PP_0567 at 659.424 kb on - strand, within PP_0567 at 659.751 kb on - strand, within PP_0567 at 659.781 kb on - strand, within PP_0567 at 659.781 kb on - strand, within PP_0567 at 659.783 kb on + strand, within PP_0567
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 657,599 - -0.8 657,665 + -0.4 657,665 + +0.4 657,743 - PP_0565 0.16 -0.1 657,838 + PP_0565 0.33 +2.0 657,848 + PP_0565 0.35 -1.5 657,876 + PP_0565 0.40 -0.7 658,000 - PP_0565 0.64 -1.0 658,039 - PP_0565 0.71 +0.0 658,086 - PP_0565 0.80 +1.5 658,143 + -0.1 658,144 - -0.5 658,144 - -0.6 658,176 + -0.4 658,176 + +0.2 658,176 + -1.2 658,192 - +0.6 658,192 - -1.0 658,279 + +0.5 658,296 + -1.4 658,296 + +0.2 658,297 - -0.7 658,302 + -0.9 658,479 - PP_0566 0.12 +0.7 658,838 - -0.3 658,862 + -0.8 658,863 - -0.3 658,863 - -0.2 658,899 + -0.6 658,938 - +0.9 658,938 - -0.0 658,938 - -0.0 658,941 + +0.6 658,941 + +0.5 658,941 + +0.3 658,941 + -0.1 658,942 - -0.2 658,942 - -1.0 658,942 - -0.3 658,942 - +0.1 658,942 - -0.3 658,942 - +0.0 658,942 - -0.8 658,988 - +0.1 658,988 - -0.1 659,021 + +1.0 659,022 - -0.2 659,173 - PP_0567 0.11 -0.8 659,249 + PP_0567 0.15 -0.2 659,261 + PP_0567 0.16 +0.5 659,261 + PP_0567 0.16 +0.8 659,261 + PP_0567 0.16 +0.5 659,262 - PP_0567 0.16 -0.2 659,423 + PP_0567 0.24 -0.9 659,423 + PP_0567 0.24 -1.7 659,424 - PP_0567 0.25 +1.2 659,751 - PP_0567 0.42 -1.3 659,781 - PP_0567 0.43 -0.1 659,781 - PP_0567 0.43 -1.1 659,783 + PP_0567 0.43 +0.5
Or see this region's nucleotide sequence