Strain Fitness in Pseudomonas putida KT2440 around PP_0534

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0533 and PP_0534 overlap by 1 nucleotidesPP_0534 and PP_0535 are separated by 181 nucleotides PP_0533: PP_0533 - histidine kinase, at 618,669 to 619,997 _0533 PP_0534: PP_0534 - putative Transcriptional regulator PfeR, at 619,997 to 620,689 _0534 PP_0535: PP_0535 - Outer membrane ferric siderophore receptor, at 620,871 to 623,048 _0535 Position (kb) 619 620 621Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 619.182 kb on + strand, within PP_0533at 619.473 kb on + strand, within PP_0533at 619.474 kb on - strand, within PP_0533at 619.485 kb on + strand, within PP_0533at 619.486 kb on - strand, within PP_0533at 619.627 kb on + strand, within PP_0533at 619.627 kb on + strand, within PP_0533at 619.746 kb on + strand, within PP_0533at 619.747 kb on - strand, within PP_0533at 619.747 kb on - strand, within PP_0533at 619.849 kb on + strand, within PP_0533at 619.888 kb on + strandat 619.888 kb on + strandat 619.888 kb on + strandat 619.888 kb on + strandat 619.889 kb on - strandat 619.889 kb on - strandat 619.889 kb on - strandat 619.893 kb on - strandat 619.893 kb on - strandat 620.026 kb on - strandat 620.026 kb on - strandat 620.026 kb on - strandat 620.026 kb on - strandat 620.131 kb on + strand, within PP_0534at 620.132 kb on - strand, within PP_0534at 620.132 kb on - strand, within PP_0534at 620.134 kb on - strand, within PP_0534at 620.134 kb on - strand, within PP_0534at 620.134 kb on - strand, within PP_0534at 620.158 kb on - strand, within PP_0534at 620.230 kb on + strand, within PP_0534at 620.230 kb on + strand, within PP_0534at 620.231 kb on - strand, within PP_0534at 620.395 kb on - strand, within PP_0534at 620.395 kb on - strand, within PP_0534at 620.564 kb on + strand, within PP_0534at 620.564 kb on + strand, within PP_0534at 620.768 kb on - strandat 620.768 kb on - strandat 620.768 kb on - strandat 620.768 kb on - strandat 620.776 kb on + strandat 620.777 kb on - strandat 620.777 kb on - strandat 621.042 kb on + strandat 621.043 kb on - strandat 621.043 kb on - strandat 621.151 kb on - strand, within PP_0535at 621.162 kb on + strand, within PP_0535at 621.162 kb on + strand, within PP_0535at 621.163 kb on - strand, within PP_0535at 621.163 kb on - strand, within PP_0535at 621.207 kb on + strand, within PP_0535at 621.207 kb on + strand, within PP_0535at 621.208 kb on - strand, within PP_0535at 621.208 kb on - strand, within PP_0535at 621.258 kb on + strand, within PP_0535at 621.271 kb on - strand, within PP_0535at 621.276 kb on + strand, within PP_0535at 621.431 kb on - strand, within PP_0535at 621.477 kb on + strand, within PP_0535at 621.478 kb on - strand, within PP_0535at 621.594 kb on + strand, within PP_0535at 621.594 kb on + strand, within PP_0535at 621.618 kb on + strand, within PP_0535at 621.618 kb on + strand, within PP_0535at 621.618 kb on + strand, within PP_0535at 621.618 kb on + strand, within PP_0535at 621.619 kb on - strand, within PP_0535at 621.619 kb on - strand, within PP_0535at 621.619 kb on - strand, within PP_0535at 621.621 kb on + strand, within PP_0535at 621.621 kb on + strand, within PP_0535at 621.621 kb on + strand, within PP_0535at 621.621 kb on + strand, within PP_0535at 621.622 kb on - strand, within PP_0535at 621.657 kb on - strand, within PP_0535

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
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619,182 + PP_0533 0.39 -0.1
619,473 + PP_0533 0.60 -0.1
619,474 - PP_0533 0.61 -0.5
619,485 + PP_0533 0.61 -0.9
619,486 - PP_0533 0.61 +0.2
619,627 + PP_0533 0.72 +0.2
619,627 + PP_0533 0.72 +0.5
619,746 + PP_0533 0.81 +0.3
619,747 - PP_0533 0.81 -1.2
619,747 - PP_0533 0.81 +0.3
619,849 + PP_0533 0.89 +0.2
619,888 + +0.3
619,888 + -0.9
619,888 + +0.5
619,888 + -1.0
619,889 - -1.1
619,889 - +0.9
619,889 - -0.1
619,893 - -2.9
619,893 - +0.7
620,026 - +0.3
620,026 - -0.6
620,026 - +0.9
620,026 - +0.0
620,131 + PP_0534 0.19 +0.6
620,132 - PP_0534 0.19 -0.4
620,132 - PP_0534 0.19 -0.6
620,134 - PP_0534 0.20 +1.0
620,134 - PP_0534 0.20 +0.5
620,134 - PP_0534 0.20 +2.2
620,158 - PP_0534 0.23 +0.4
620,230 + PP_0534 0.34 -0.5
620,230 + PP_0534 0.34 -1.9
620,231 - PP_0534 0.34 +0.7
620,395 - PP_0534 0.57 +0.7
620,395 - PP_0534 0.57 +0.7
620,564 + PP_0534 0.82 +0.4
620,564 + PP_0534 0.82 +0.7
620,768 - -0.2
620,768 - +0.5
620,768 - +0.5
620,768 - +0.3
620,776 + +0.6
620,777 - -1.4
620,777 - -0.2
621,042 + -0.6
621,043 - -0.0
621,043 - -1.8
621,151 - PP_0535 0.13 -0.2
621,162 + PP_0535 0.13 +0.5
621,162 + PP_0535 0.13 -0.3
621,163 - PP_0535 0.13 +1.2
621,163 - PP_0535 0.13 +0.4
621,207 + PP_0535 0.15 +0.2
621,207 + PP_0535 0.15 +0.6
621,208 - PP_0535 0.15 +1.1
621,208 - PP_0535 0.15 +1.0
621,258 + PP_0535 0.18 -0.8
621,271 - PP_0535 0.18 -0.2
621,276 + PP_0535 0.19 -1.4
621,431 - PP_0535 0.26 -0.5
621,477 + PP_0535 0.28 +0.1
621,478 - PP_0535 0.28 +0.8
621,594 + PP_0535 0.33 +1.3
621,594 + PP_0535 0.33 -0.5
621,618 + PP_0535 0.34 -0.5
621,618 + PP_0535 0.34 -0.0
621,618 + PP_0535 0.34 +0.1
621,618 + PP_0535 0.34 -0.3
621,619 - PP_0535 0.34 +0.1
621,619 - PP_0535 0.34 -1.5
621,619 - PP_0535 0.34 -0.9
621,621 + PP_0535 0.34 +0.3
621,621 + PP_0535 0.34 -0.8
621,621 + PP_0535 0.34 +0.6
621,621 + PP_0535 0.34 +0.3
621,622 - PP_0535 0.34 +1.3
621,657 - PP_0535 0.36 -0.1

Or see this region's nucleotide sequence