Strain Fitness in Agrobacterium fabrum C58 around Atu1363

Experiment: P5L5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1362 and Atu1363 are separated by 272 nucleotidesAtu1363 and Atu1364 are separated by 10 nucleotides Atu1362: Atu1362 - two component sensor kinase, at 1,355,121 to 1,357,706 Atu1362 Atu1363: Atu1363 - ATP-dependent Clp protease adaptor protein ClpS, at 1,357,979 to 1,358,332 Atu1363 Atu1364: Atu1364 - ATP-dependent Clp protease, ATP-binding subunit, at 1,358,343 to 1,360,853 Atu1364 Position (kb) 1357 1358 1359Strain fitness (log2 ratio) -3 -2 -1 0 1at 1357.701 kb on + strandat 1357.824 kb on - strandat 1357.906 kb on + strandat 1357.935 kb on - strandat 1358.013 kb on - strandat 1358.038 kb on + strand, within Atu1363at 1358.812 kb on + strand, within Atu1364at 1358.927 kb on - strand, within Atu1364at 1358.988 kb on + strand, within Atu1364at 1359.068 kb on + strand, within Atu1364at 1359.311 kb on + strand, within Atu1364at 1359.311 kb on + strand, within Atu1364at 1359.319 kb on - strand, within Atu1364at 1359.326 kb on + strand, within Atu1364

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Per-strain Table

Position Strand Gene LocusTag Fraction P5L5
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1,357,701 + +0.6
1,357,824 - +0.6
1,357,906 + +1.6
1,357,935 - -0.6
1,358,013 - +1.6
1,358,038 + Atu1363 0.17 -0.6
1,358,812 + Atu1364 0.19 -1.8
1,358,927 - Atu1364 0.23 +0.0
1,358,988 + Atu1364 0.26 -0.7
1,359,068 + Atu1364 0.29 +0.6
1,359,311 + Atu1364 0.39 -2.6
1,359,311 + Atu1364 0.39 -2.8
1,359,319 - Atu1364 0.39 +1.6
1,359,326 + Atu1364 0.39 +0.6

Or see this region's nucleotide sequence