Strain Fitness in Agrobacterium fabrum C58 around Atu6196

Experiment: P4L5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6193 and Atu6194 are separated by 23 nucleotidesAtu6194 and Atu6195 overlap by 11 nucleotidesAtu6195 and Atu6196 are separated by 16 nucleotidesAtu6196 and Atu6197 are separated by 41 nucleotides Atu6193: Atu6193 - conserved hypothetical protein, at 211,215 to 211,946 Atu6193 Atu6194: Atu6194 - conserved hypothetical protein, at 211,970 to 212,497 Atu6194 Atu6195: Atu6195 - conserved hypothetical protein, at 212,487 to 212,684 Atu6195 Atu6196: Atu6196 - arabinose phosphate phosphatase, at 212,701 to 213,429 Atu6196 Atu6197: Atu6197 - agrocinopine phosphodiesterase, at 213,471 to 213,755 Atu6197 Position (kb) 212 213 214Strain fitness (log2 ratio) -1 0 1 2at 211.733 kb on + strand, within Atu6193at 211.735 kb on + strand, within Atu6193at 211.743 kb on - strand, within Atu6193at 211.743 kb on - strand, within Atu6193at 211.765 kb on + strand, within Atu6193at 211.765 kb on + strand, within Atu6193at 211.765 kb on + strand, within Atu6193at 211.773 kb on - strand, within Atu6193at 211.773 kb on - strand, within Atu6193at 211.787 kb on + strand, within Atu6193at 211.787 kb on - strand, within Atu6193at 211.812 kb on - strand, within Atu6193at 211.812 kb on - strand, within Atu6193at 211.814 kb on + strand, within Atu6193at 211.859 kb on + strand, within Atu6193at 211.864 kb on + strand, within Atu6193at 211.874 kb on + strandat 211.874 kb on + strandat 211.882 kb on - strandat 211.882 kb on - strandat 211.887 kb on - strandat 211.887 kb on - strandat 211.958 kb on + strandat 211.966 kb on - strandat 211.986 kb on - strandat 212.034 kb on + strand, within Atu6194at 212.047 kb on - strand, within Atu6194at 212.052 kb on - strand, within Atu6194at 212.108 kb on - strand, within Atu6194at 212.140 kb on - strand, within Atu6194at 212.193 kb on - strand, within Atu6194at 212.193 kb on - strand, within Atu6194at 212.204 kb on + strand, within Atu6194at 212.204 kb on + strand, within Atu6194at 212.222 kb on - strand, within Atu6194at 212.243 kb on - strand, within Atu6194at 212.245 kb on - strand, within Atu6194at 212.247 kb on - strand, within Atu6194at 212.254 kb on + strand, within Atu6194at 212.255 kb on + strand, within Atu6194at 212.262 kb on - strand, within Atu6194at 212.310 kb on + strand, within Atu6194at 212.315 kb on + strand, within Atu6194at 212.316 kb on + strand, within Atu6194at 212.318 kb on - strand, within Atu6194at 212.323 kb on - strand, within Atu6194at 212.337 kb on - strand, within Atu6194at 212.378 kb on - strand, within Atu6194at 212.430 kb on + strand, within Atu6194at 212.430 kb on + strand, within Atu6194at 212.438 kb on - strand, within Atu6194at 212.438 kb on - strand, within Atu6194at 212.438 kb on - strand, within Atu6194at 212.438 kb on - strand, within Atu6194at 212.456 kb on - strandat 212.457 kb on - strandat 212.470 kb on - strandat 212.477 kb on - strandat 212.485 kb on - strandat 212.492 kb on - strandat 212.499 kb on + strandat 212.571 kb on + strand, within Atu6195at 212.649 kb on + strand, within Atu6195at 212.649 kb on - strand, within Atu6195at 212.693 kb on + strandat 212.701 kb on - strandat 212.719 kb on - strandat 212.719 kb on - strandat 212.740 kb on - strandat 212.771 kb on + strandat 212.776 kb on + strand, within Atu6196at 212.790 kb on + strand, within Atu6196at 212.813 kb on + strand, within Atu6196at 212.821 kb on - strand, within Atu6196at 212.862 kb on - strand, within Atu6196at 212.866 kb on + strand, within Atu6196at 212.883 kb on + strand, within Atu6196at 212.883 kb on + strand, within Atu6196at 212.905 kb on - strand, within Atu6196at 212.910 kb on - strand, within Atu6196at 212.937 kb on - strand, within Atu6196at 212.991 kb on - strand, within Atu6196at 212.991 kb on - strand, within Atu6196at 213.049 kb on + strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.049 kb on - strand, within Atu6196at 213.060 kb on - strand, within Atu6196at 213.119 kb on + strand, within Atu6196at 213.133 kb on + strand, within Atu6196at 213.135 kb on - strand, within Atu6196at 213.138 kb on + strand, within Atu6196at 213.140 kb on - strand, within Atu6196at 213.160 kb on - strand, within Atu6196at 213.160 kb on - strand, within Atu6196at 213.207 kb on + strand, within Atu6196at 213.214 kb on - strand, within Atu6196at 213.287 kb on - strand, within Atu6196at 213.324 kb on + strand, within Atu6196at 213.346 kb on - strand, within Atu6196at 213.404 kb on + strandat 213.435 kb on + strandat 213.443 kb on - strandat 213.464 kb on + strandat 213.464 kb on + strandat 213.487 kb on + strandat 213.496 kb on + strandat 213.502 kb on - strand, within Atu6197at 213.514 kb on - strand, within Atu6197at 213.514 kb on - strand, within Atu6197at 213.553 kb on + strand, within Atu6197at 213.571 kb on - strand, within Atu6197at 213.617 kb on + strand, within Atu6197at 213.620 kb on - strand, within Atu6197at 213.628 kb on - strand, within Atu6197at 213.670 kb on - strand, within Atu6197at 213.680 kb on + strand, within Atu6197at 213.686 kb on - strand, within Atu6197at 213.733 kb on + strandat 213.743 kb on + strandat 213.793 kb on - strandat 213.804 kb on + strandat 213.817 kb on - strandat 213.833 kb on - strandat 213.884 kb on - strandat 213.918 kb on - strandat 213.918 kb on - strandat 213.977 kb on + strandat 213.985 kb on - strandat 213.998 kb on + strandat 214.006 kb on + strandat 214.014 kb on - strandat 214.044 kb on - strandat 214.156 kb on + strandat 214.159 kb on - strandat 214.164 kb on + strandat 214.164 kb on - strandat 214.164 kb on - strandat 214.166 kb on + strandat 214.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P4L5
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211,733 + Atu6193 0.71 +0.3
211,735 + Atu6193 0.71 +0.3
211,743 - Atu6193 0.72 -0.3
211,743 - Atu6193 0.72 +0.5
211,765 + Atu6193 0.75 +0.0
211,765 + Atu6193 0.75 +1.3
211,765 + Atu6193 0.75 +0.7
211,773 - Atu6193 0.76 +0.3
211,773 - Atu6193 0.76 +0.2
211,787 + Atu6193 0.78 -0.5
211,787 - Atu6193 0.78 +0.6
211,812 - Atu6193 0.82 +0.0
211,812 - Atu6193 0.82 +0.3
211,814 + Atu6193 0.82 +0.6
211,859 + Atu6193 0.88 +0.2
211,864 + Atu6193 0.89 -0.1
211,874 + +0.1
211,874 + +0.4
211,882 - +0.1
211,882 - +1.7
211,887 - +0.7
211,887 - +1.9
211,958 + +0.2
211,966 - -0.2
211,986 - +1.3
212,034 + Atu6194 0.12 +1.1
212,047 - Atu6194 0.15 +1.3
212,052 - Atu6194 0.16 +0.9
212,108 - Atu6194 0.26 +0.5
212,140 - Atu6194 0.32 -0.3
212,193 - Atu6194 0.42 -0.7
212,193 - Atu6194 0.42 -0.6
212,204 + Atu6194 0.44 +0.4
212,204 + Atu6194 0.44 -0.7
212,222 - Atu6194 0.48 +0.5
212,243 - Atu6194 0.52 -0.7
212,245 - Atu6194 0.52 -0.1
212,247 - Atu6194 0.52 +0.1
212,254 + Atu6194 0.54 +1.7
212,255 + Atu6194 0.54 +0.1
212,262 - Atu6194 0.55 +0.8
212,310 + Atu6194 0.64 -0.3
212,315 + Atu6194 0.65 -0.1
212,316 + Atu6194 0.66 +0.1
212,318 - Atu6194 0.66 +0.2
212,323 - Atu6194 0.67 +1.3
212,337 - Atu6194 0.70 -0.7
212,378 - Atu6194 0.77 +0.1
212,430 + Atu6194 0.87 -1.6
212,430 + Atu6194 0.87 +0.3
212,438 - Atu6194 0.89 -0.0
212,438 - Atu6194 0.89 -0.5
212,438 - Atu6194 0.89 +1.7
212,438 - Atu6194 0.89 +0.1
212,456 - -0.7
212,457 - +2.3
212,470 - +0.9
212,477 - +1.1
212,485 - -0.6
212,492 - -0.6
212,499 + -1.1
212,571 + Atu6195 0.42 -0.5
212,649 + Atu6195 0.82 -1.7
212,649 - Atu6195 0.82 -0.4
212,693 + -1.1
212,701 - +2.7
212,719 - +0.1
212,719 - +0.1
212,740 - +1.1
212,771 + +0.5
212,776 + Atu6196 0.10 +0.1
212,790 + Atu6196 0.12 +0.1
212,813 + Atu6196 0.15 +0.1
212,821 - Atu6196 0.16 +0.3
212,862 - Atu6196 0.22 +0.4
212,866 + Atu6196 0.23 +0.1
212,883 + Atu6196 0.25 +0.4
212,883 + Atu6196 0.25 +0.5
212,905 - Atu6196 0.28 +0.8
212,910 - Atu6196 0.29 +0.4
212,937 - Atu6196 0.32 +2.3
212,991 - Atu6196 0.40 +1.1
212,991 - Atu6196 0.40 +0.2
213,049 + Atu6196 0.48 -0.2
213,049 - Atu6196 0.48 +1.0
213,049 - Atu6196 0.48 -0.9
213,049 - Atu6196 0.48 +0.7
213,049 - Atu6196 0.48 +0.4
213,049 - Atu6196 0.48 -0.4
213,049 - Atu6196 0.48 -0.6
213,060 - Atu6196 0.49 +0.3
213,119 + Atu6196 0.57 -1.0
213,133 + Atu6196 0.59 -0.0
213,135 - Atu6196 0.60 -0.0
213,138 + Atu6196 0.60 -1.0
213,140 - Atu6196 0.60 +0.7
213,160 - Atu6196 0.63 +0.2
213,160 - Atu6196 0.63 -0.6
213,207 + Atu6196 0.69 +0.7
213,214 - Atu6196 0.70 -0.2
213,287 - Atu6196 0.80 -0.3
213,324 + Atu6196 0.85 -1.3
213,346 - Atu6196 0.88 +0.0
213,404 + -0.8
213,435 + -1.2
213,443 - +1.7
213,464 + +0.1
213,464 + +0.9
213,487 + -0.1
213,496 + +0.1
213,502 - Atu6197 0.11 -0.0
213,514 - Atu6197 0.15 +0.7
213,514 - Atu6197 0.15 +0.9
213,553 + Atu6197 0.29 -0.6
213,571 - Atu6197 0.35 -0.1
213,617 + Atu6197 0.51 -1.5
213,620 - Atu6197 0.52 -0.9
213,628 - Atu6197 0.55 -1.1
213,670 - Atu6197 0.70 +0.4
213,680 + Atu6197 0.73 -0.8
213,686 - Atu6197 0.75 -0.8
213,733 + -0.2
213,743 + -0.5
213,793 - +0.4
213,804 + -0.9
213,817 - +0.0
213,833 - +0.3
213,884 - +1.1
213,918 - -1.4
213,918 - -0.4
213,977 + -0.4
213,985 - -1.5
213,998 + +0.9
214,006 + -0.8
214,014 - -0.1
214,044 - -0.5
214,156 + -0.3
214,159 - -0.9
214,164 + -0.6
214,164 - +0.4
214,164 - +0.7
214,166 + +0.2
214,172 - -0.1

Or see this region's nucleotide sequence