Experiment: P4L5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6167 and Atu6168 overlap by 1 nucleotides Atu6168 and Atu6169 overlap by 1 nucleotides Atu6169 and Atu6170 overlap by 1 nucleotides Atu6170 and Atu6171 are separated by 16 nucleotides Atu6171 and Atu6172 are separated by 100 nucleotides
Atu6167: Atu6167 - component of type IV secretion system, at 183,877 to 184,614
Atu6167
Atu6168: Atu6168 - component of type IV secretion system, pilin subunit, at 184,614 to 184,979
Atu6168
Atu6169: Atu6169 - component of type IV secretion system, at 184,979 to 185,305
Atu6169
Atu6170: Atu6170 - component of type IV secretion system, at 185,305 to 187,674
Atu6170
Atu6171: Atu6171 - component of type IV secretion system, at 187,691 to 188,353
Atu6171
Atu6172: Atu6172 - component of type IV secretion system, at 188,454 to 189,341
Atu6172
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 184.355 kb on + strand, within Atu6167 at 184.355 kb on + strand, within Atu6167 at 184.391 kb on + strand, within Atu6167 at 184.418 kb on - strand, within Atu6167 at 184.454 kb on - strand, within Atu6167 at 184.488 kb on - strand, within Atu6167 at 184.503 kb on + strand, within Atu6167 at 184.503 kb on + strand, within Atu6167 at 184.511 kb on - strand, within Atu6167 at 184.578 kb on + strand at 184.676 kb on + strand, within Atu6168 at 184.679 kb on - strand, within Atu6168 at 184.679 kb on - strand, within Atu6168 at 184.683 kb on + strand, within Atu6168 at 184.683 kb on + strand, within Atu6168 at 184.683 kb on + strand, within Atu6168 at 184.709 kb on - strand, within Atu6168 at 184.711 kb on + strand, within Atu6168 at 184.711 kb on + strand, within Atu6168 at 184.711 kb on + strand, within Atu6168 at 184.711 kb on + strand, within Atu6168 at 184.719 kb on - strand, within Atu6168 at 184.719 kb on - strand, within Atu6168 at 184.719 kb on - strand, within Atu6168 at 184.722 kb on - strand, within Atu6168 at 184.735 kb on + strand, within Atu6168 at 184.776 kb on + strand, within Atu6168 at 184.784 kb on - strand, within Atu6168 at 184.791 kb on - strand, within Atu6168 at 184.807 kb on + strand, within Atu6168 at 184.807 kb on + strand, within Atu6168 at 184.842 kb on + strand, within Atu6168 at 184.964 kb on + strand at 184.972 kb on - strand at 185.006 kb on - strand at 185.116 kb on + strand, within Atu6169 at 185.129 kb on + strand, within Atu6169 at 185.129 kb on + strand, within Atu6169 at 185.221 kb on - strand, within Atu6169 at 185.221 kb on - strand, within Atu6169 at 185.236 kb on + strand, within Atu6169 at 185.236 kb on + strand, within Atu6169 at 185.247 kb on + strand, within Atu6169 at 185.255 kb on - strand, within Atu6169 at 185.295 kb on - strand at 185.307 kb on + strand at 185.326 kb on + strand at 185.334 kb on - strand at 185.338 kb on + strand at 185.341 kb on - strand at 185.341 kb on - strand at 185.341 kb on - strand at 185.346 kb on - strand at 185.362 kb on + strand at 185.362 kb on - strand at 185.377 kb on - strand at 185.384 kb on - strand at 185.427 kb on + strand at 185.543 kb on - strand, within Atu6170 at 185.620 kb on - strand, within Atu6170 at 185.653 kb on + strand, within Atu6170 at 185.660 kb on + strand, within Atu6170 at 185.668 kb on - strand, within Atu6170 at 185.670 kb on + strand, within Atu6170 at 185.760 kb on - strand, within Atu6170 at 185.760 kb on - strand, within Atu6170 at 185.767 kb on - strand, within Atu6170 at 185.774 kb on - strand, within Atu6170 at 185.822 kb on + strand, within Atu6170 at 185.862 kb on + strand, within Atu6170 at 185.862 kb on + strand, within Atu6170 at 185.862 kb on + strand, within Atu6170 at 185.862 kb on + strand, within Atu6170 at 185.862 kb on + strand, within Atu6170 at 185.863 kb on - strand, within Atu6170 at 185.870 kb on - strand, within Atu6170 at 185.872 kb on + strand, within Atu6170 at 185.883 kb on + strand, within Atu6170 at 185.893 kb on + strand, within Atu6170 at 185.915 kb on - strand, within Atu6170 at 185.935 kb on + strand, within Atu6170 at 185.940 kb on + strand, within Atu6170 at 185.948 kb on - strand, within Atu6170 at 185.948 kb on - strand, within Atu6170 at 185.948 kb on - strand, within Atu6170 at 185.948 kb on - strand, within Atu6170 at 185.948 kb on - strand, within Atu6170 at 185.985 kb on - strand, within Atu6170 at 186.067 kb on + strand, within Atu6170 at 186.193 kb on + strand, within Atu6170 at 186.201 kb on - strand, within Atu6170 at 186.306 kb on + strand, within Atu6170 at 186.350 kb on - strand, within Atu6170 at 186.366 kb on + strand, within Atu6170 at 186.366 kb on - strand, within Atu6170 at 186.374 kb on - strand, within Atu6170 at 186.410 kb on + strand, within Atu6170 at 186.460 kb on + strand, within Atu6170 at 186.460 kb on + strand, within Atu6170 at 186.502 kb on + strand, within Atu6170 at 186.502 kb on + strand, within Atu6170 at 186.510 kb on - strand, within Atu6170 at 186.510 kb on - strand, within Atu6170 at 186.510 kb on - strand, within Atu6170 at 186.528 kb on + strand, within Atu6170 at 186.536 kb on - strand, within Atu6170 at 186.606 kb on + strand, within Atu6170 at 186.623 kb on - strand, within Atu6170 at 186.623 kb on - strand, within Atu6170 at 186.635 kb on + strand, within Atu6170 at 186.635 kb on + strand, within Atu6170 at 186.636 kb on - strand, within Atu6170 at 186.636 kb on - strand, within Atu6170 at 186.643 kb on - strand, within Atu6170 at 186.660 kb on + strand, within Atu6170 at 186.660 kb on + strand, within Atu6170 at 186.660 kb on + strand, within Atu6170 at 186.668 kb on - strand, within Atu6170 at 186.691 kb on - strand, within Atu6170 at 186.711 kb on - strand, within Atu6170 at 186.718 kb on - strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.798 kb on + strand, within Atu6170 at 186.849 kb on + strand, within Atu6170 at 186.880 kb on - strand, within Atu6170 at 186.908 kb on - strand, within Atu6170 at 186.929 kb on - strand, within Atu6170 at 186.975 kb on + strand, within Atu6170 at 186.992 kb on - strand, within Atu6170 at 187.006 kb on + strand, within Atu6170 at 187.006 kb on - strand, within Atu6170 at 187.014 kb on - strand, within Atu6170 at 187.014 kb on - strand, within Atu6170 at 187.014 kb on - strand, within Atu6170 at 187.014 kb on - strand, within Atu6170 at 187.030 kb on + strand, within Atu6170 at 187.030 kb on + strand, within Atu6170 at 187.035 kb on + strand, within Atu6170 at 187.038 kb on - strand, within Atu6170 at 187.038 kb on - strand, within Atu6170 at 187.038 kb on - strand, within Atu6170 at 187.043 kb on - strand, within Atu6170 at 187.144 kb on + strand, within Atu6170 at 187.150 kb on + strand, within Atu6170 at 187.150 kb on + strand, within Atu6170 at 187.158 kb on - strand, within Atu6170 at 187.182 kb on - strand, within Atu6170 at 187.379 kb on - strand, within Atu6170 at 187.405 kb on + strand, within Atu6170 at 187.453 kb on + strand at 187.473 kb on - strand at 187.473 kb on - strand at 187.482 kb on - strand at 187.496 kb on - strand at 187.520 kb on + strand at 187.569 kb on + strand at 187.569 kb on + strand at 187.569 kb on + strand at 187.577 kb on - strand at 187.577 kb on - strand at 187.594 kb on - strand at 187.606 kb on + strand at 187.606 kb on + strand at 187.606 kb on + strand at 187.606 kb on + strand at 187.614 kb on - strand at 187.614 kb on - strand at 187.617 kb on + strand at 187.622 kb on + strand at 187.681 kb on - strand at 187.705 kb on + strand at 187.731 kb on + strand at 187.731 kb on + strand at 187.818 kb on - strand, within Atu6171 at 187.839 kb on + strand, within Atu6171 at 187.847 kb on - strand, within Atu6171 at 187.847 kb on - strand, within Atu6171 at 187.864 kb on - strand, within Atu6171 at 187.892 kb on + strand, within Atu6171 at 188.026 kb on - strand, within Atu6171 at 188.036 kb on + strand, within Atu6171 at 188.044 kb on - strand, within Atu6171 at 188.095 kb on - strand, within Atu6171 at 188.103 kb on - strand, within Atu6171 at 188.136 kb on + strand, within Atu6171 at 188.229 kb on + strand, within Atu6171 at 188.269 kb on + strand, within Atu6171 at 188.277 kb on - strand, within Atu6171 at 188.305 kb on + strand at 188.334 kb on + strand at 188.348 kb on + strand at 188.356 kb on - strand at 188.356 kb on - strand at 188.374 kb on + strand at 188.379 kb on + strand at 188.444 kb on + strand at 188.452 kb on - strand at 188.452 kb on - strand at 188.485 kb on - strand at 188.528 kb on - strand at 188.542 kb on - strand at 188.548 kb on + strand, within Atu6172 at 188.584 kb on + strand, within Atu6172 at 188.586 kb on - strand, within Atu6172 at 188.594 kb on - strand, within Atu6172 at 188.598 kb on + strand, within Atu6172 at 188.598 kb on + strand, within Atu6172 at 188.607 kb on + strand, within Atu6172 at 188.662 kb on - strand, within Atu6172
Per-strain Table
Position Strand Gene LocusTag Fraction P4L5 remove 184,355 + Atu6167 0.65 +0.4 184,355 + Atu6167 0.65 +0.0 184,391 + Atu6167 0.70 +0.4 184,418 - Atu6167 0.73 +0.1 184,454 - Atu6167 0.78 +0.9 184,488 - Atu6167 0.83 +0.3 184,503 + Atu6167 0.85 +0.2 184,503 + Atu6167 0.85 +0.3 184,511 - Atu6167 0.86 +0.5 184,578 + +1.7 184,676 + Atu6168 0.17 +0.7 184,679 - Atu6168 0.18 +0.6 184,679 - Atu6168 0.18 +0.5 184,683 + Atu6168 0.19 +0.3 184,683 + Atu6168 0.19 +0.1 184,683 + Atu6168 0.19 +1.1 184,709 - Atu6168 0.26 +0.1 184,711 + Atu6168 0.27 +0.6 184,711 + Atu6168 0.27 -0.4 184,711 + Atu6168 0.27 +0.8 184,711 + Atu6168 0.27 +0.7 184,719 - Atu6168 0.29 -0.3 184,719 - Atu6168 0.29 +0.7 184,719 - Atu6168 0.29 +1.7 184,722 - Atu6168 0.30 -0.7 184,735 + Atu6168 0.33 +2.3 184,776 + Atu6168 0.44 +2.7 184,784 - Atu6168 0.46 +0.9 184,791 - Atu6168 0.48 +0.7 184,807 + Atu6168 0.53 +0.5 184,807 + Atu6168 0.53 +1.0 184,842 + Atu6168 0.62 +0.1 184,964 + -0.8 184,972 - +0.2 185,006 - +0.5 185,116 + Atu6169 0.42 -1.7 185,129 + Atu6169 0.46 -2.1 185,129 + Atu6169 0.46 +0.8 185,221 - Atu6169 0.74 +0.3 185,221 - Atu6169 0.74 +0.5 185,236 + Atu6169 0.79 +0.5 185,236 + Atu6169 0.79 +0.1 185,247 + Atu6169 0.82 -0.7 185,255 - Atu6169 0.84 -0.0 185,295 - +1.1 185,307 + +0.7 185,326 + +1.2 185,334 - +0.9 185,338 + -0.6 185,341 - +0.9 185,341 - -0.1 185,341 - +0.9 185,346 - +1.3 185,362 + +1.1 185,362 - +0.4 185,377 - -0.4 185,384 - -0.2 185,427 + +0.1 185,543 - Atu6170 0.10 -0.3 185,620 - Atu6170 0.13 +1.7 185,653 + Atu6170 0.15 +0.9 185,660 + Atu6170 0.15 +0.6 185,668 - Atu6170 0.15 -0.8 185,670 + Atu6170 0.15 -0.1 185,760 - Atu6170 0.19 +1.1 185,760 - Atu6170 0.19 +1.1 185,767 - Atu6170 0.19 +0.3 185,774 - Atu6170 0.20 +0.3 185,822 + Atu6170 0.22 +0.4 185,862 + Atu6170 0.24 -0.3 185,862 + Atu6170 0.24 -0.1 185,862 + Atu6170 0.24 +0.7 185,862 + Atu6170 0.24 -0.5 185,862 + Atu6170 0.24 -0.4 185,863 - Atu6170 0.24 +0.1 185,870 - Atu6170 0.24 +0.1 185,872 + Atu6170 0.24 +0.0 185,883 + Atu6170 0.24 +0.1 185,893 + Atu6170 0.25 +0.0 185,915 - Atu6170 0.26 +0.1 185,935 + Atu6170 0.27 +0.5 185,940 + Atu6170 0.27 +0.8 185,948 - Atu6170 0.27 +0.4 185,948 - Atu6170 0.27 +1.2 185,948 - Atu6170 0.27 -1.3 185,948 - Atu6170 0.27 +0.5 185,948 - Atu6170 0.27 +0.4 185,985 - Atu6170 0.29 -2.4 186,067 + Atu6170 0.32 +0.6 186,193 + Atu6170 0.37 +0.7 186,201 - Atu6170 0.38 +0.0 186,306 + Atu6170 0.42 +0.3 186,350 - Atu6170 0.44 -0.4 186,366 + Atu6170 0.45 +0.9 186,366 - Atu6170 0.45 +0.5 186,374 - Atu6170 0.45 +0.4 186,410 + Atu6170 0.47 +0.8 186,460 + Atu6170 0.49 +0.4 186,460 + Atu6170 0.49 +0.1 186,502 + Atu6170 0.51 +0.1 186,502 + Atu6170 0.51 +0.4 186,510 - Atu6170 0.51 +0.3 186,510 - Atu6170 0.51 -1.1 186,510 - Atu6170 0.51 +2.0 186,528 + Atu6170 0.52 -0.0 186,536 - Atu6170 0.52 +0.9 186,606 + Atu6170 0.55 +0.5 186,623 - Atu6170 0.56 +0.5 186,623 - Atu6170 0.56 +0.1 186,635 + Atu6170 0.56 +0.6 186,635 + Atu6170 0.56 +0.7 186,636 - Atu6170 0.56 -0.1 186,636 - Atu6170 0.56 +0.5 186,643 - Atu6170 0.56 -0.6 186,660 + Atu6170 0.57 +0.5 186,660 + Atu6170 0.57 +0.8 186,660 + Atu6170 0.57 -0.6 186,668 - Atu6170 0.58 +0.3 186,691 - Atu6170 0.58 -0.1 186,711 - Atu6170 0.59 -0.0 186,718 - Atu6170 0.60 +0.1 186,756 + Atu6170 0.61 +0.1 186,756 + Atu6170 0.61 +0.3 186,756 + Atu6170 0.61 -0.2 186,756 + Atu6170 0.61 +0.7 186,756 + Atu6170 0.61 +0.2 186,756 + Atu6170 0.61 -0.2 186,756 + Atu6170 0.61 -0.2 186,756 + Atu6170 0.61 -0.5 186,756 + Atu6170 0.61 -0.0 186,756 + Atu6170 0.61 +1.3 186,756 + Atu6170 0.61 +1.1 186,756 + Atu6170 0.61 -0.6 186,764 - Atu6170 0.62 +1.5 186,764 - Atu6170 0.62 -0.1 186,764 - Atu6170 0.62 +0.4 186,764 - Atu6170 0.62 -0.0 186,764 - Atu6170 0.62 +0.5 186,764 - Atu6170 0.62 +0.6 186,764 - Atu6170 0.62 -0.1 186,798 + Atu6170 0.63 +0.2 186,849 + Atu6170 0.65 +0.7 186,880 - Atu6170 0.66 +1.7 186,908 - Atu6170 0.68 +0.3 186,929 - Atu6170 0.69 +0.1 186,975 + Atu6170 0.70 -0.2 186,992 - Atu6170 0.71 +0.7 187,006 + Atu6170 0.72 +0.2 187,006 - Atu6170 0.72 -0.7 187,014 - Atu6170 0.72 +0.5 187,014 - Atu6170 0.72 +0.3 187,014 - Atu6170 0.72 -0.2 187,014 - Atu6170 0.72 +0.0 187,030 + Atu6170 0.73 +0.3 187,030 + Atu6170 0.73 +0.5 187,035 + Atu6170 0.73 +0.3 187,038 - Atu6170 0.73 +0.2 187,038 - Atu6170 0.73 +1.4 187,038 - Atu6170 0.73 +1.7 187,043 - Atu6170 0.73 +0.7 187,144 + Atu6170 0.78 -0.5 187,150 + Atu6170 0.78 -0.1 187,150 + Atu6170 0.78 +1.1 187,158 - Atu6170 0.78 -0.2 187,182 - Atu6170 0.79 +1.7 187,379 - Atu6170 0.88 -0.1 187,405 + Atu6170 0.89 +2.3 187,453 + +0.6 187,473 - -0.3 187,473 - -0.7 187,482 - +0.4 187,496 - +0.6 187,520 + -0.6 187,569 + -0.8 187,569 + -1.0 187,569 + -0.0 187,577 - -0.4 187,577 - -0.5 187,594 - +0.3 187,606 + +0.7 187,606 + +0.1 187,606 + -0.3 187,606 + +0.7 187,614 - +0.7 187,614 - +0.4 187,617 + -0.6 187,622 + +0.3 187,681 - +0.4 187,705 + +0.1 187,731 + +0.9 187,731 + +0.5 187,818 - Atu6171 0.19 -0.1 187,839 + Atu6171 0.22 +0.3 187,847 - Atu6171 0.24 +3.7 187,847 - Atu6171 0.24 -0.6 187,864 - Atu6171 0.26 +0.4 187,892 + Atu6171 0.30 +0.4 188,026 - Atu6171 0.51 +0.0 188,036 + Atu6171 0.52 +0.9 188,044 - Atu6171 0.53 +0.6 188,095 - Atu6171 0.61 +0.0 188,103 - Atu6171 0.62 +1.7 188,136 + Atu6171 0.67 +1.7 188,229 + Atu6171 0.81 +0.4 188,269 + Atu6171 0.87 +0.4 188,277 - Atu6171 0.88 -0.3 188,305 + +0.6 188,334 + +0.0 188,348 + -0.1 188,356 - -0.3 188,356 - -0.0 188,374 + -0.1 188,379 + +0.1 188,444 + +0.4 188,452 - +1.3 188,452 - +0.2 188,485 - +0.1 188,528 - -0.1 188,542 - +1.2 188,548 + Atu6172 0.11 +0.5 188,584 + Atu6172 0.15 -0.8 188,586 - Atu6172 0.15 +0.7 188,594 - Atu6172 0.16 +0.2 188,598 + Atu6172 0.16 -1.2 188,598 + Atu6172 0.16 +0.5 188,607 + Atu6172 0.17 +0.5 188,662 - Atu6172 0.23 -0.0
Or see this region's nucleotide sequence