Strain Fitness in Agrobacterium fabrum C58 around Atu6173

Experiment: P3L5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6172 and Atu6173 are separated by 35 nucleotidesAtu6173 and Atu6174 overlap by 14 nucleotidesAtu6174 and Atu6175 overlap by 4 nucleotides Atu6172: Atu6172 - component of type IV secretion system, at 188,454 to 189,341 Atu6172 Atu6173: Atu6173 - component of type IV secretion system, at 189,377 to 189,544 Atu6173 Atu6174: Atu6174 - component of type IV secretion system, at 189,531 to 190,244 Atu6174 Atu6175: Atu6175 - component of type IV secretion system, at 190,241 to 191,122 Atu6175 Position (kb) 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 188.379 kb on + strandat 188.444 kb on + strandat 188.452 kb on - strandat 188.452 kb on - strandat 188.485 kb on - strandat 188.528 kb on - strandat 188.542 kb on - strandat 188.548 kb on + strand, within Atu6172at 188.584 kb on + strand, within Atu6172at 188.586 kb on - strand, within Atu6172at 188.594 kb on - strand, within Atu6172at 188.598 kb on + strand, within Atu6172at 188.598 kb on + strand, within Atu6172at 188.607 kb on + strand, within Atu6172at 188.662 kb on - strand, within Atu6172at 188.699 kb on - strand, within Atu6172at 188.781 kb on + strand, within Atu6172at 188.789 kb on - strand, within Atu6172at 188.789 kb on - strand, within Atu6172at 188.789 kb on - strand, within Atu6172at 188.799 kb on - strand, within Atu6172at 188.801 kb on + strand, within Atu6172at 188.809 kb on - strand, within Atu6172at 188.818 kb on + strand, within Atu6172at 188.818 kb on + strand, within Atu6172at 188.818 kb on + strand, within Atu6172at 188.826 kb on - strand, within Atu6172at 188.898 kb on + strand, within Atu6172at 188.921 kb on + strand, within Atu6172at 188.981 kb on + strand, within Atu6172at 188.988 kb on + strand, within Atu6172at 189.003 kb on + strand, within Atu6172at 189.043 kb on + strand, within Atu6172at 189.061 kb on + strand, within Atu6172at 189.062 kb on - strand, within Atu6172at 189.069 kb on - strand, within Atu6172at 189.133 kb on + strand, within Atu6172at 189.133 kb on + strand, within Atu6172at 189.133 kb on + strand, within Atu6172at 189.133 kb on + strand, within Atu6172at 189.133 kb on + strand, within Atu6172at 189.133 kb on + strand, within Atu6172at 189.141 kb on - strand, within Atu6172at 189.311 kb on - strandat 189.311 kb on - strandat 189.343 kb on - strandat 189.375 kb on + strandat 189.375 kb on + strandat 189.394 kb on + strand, within Atu6173at 189.486 kb on + strand, within Atu6173at 189.503 kb on + strand, within Atu6173at 189.511 kb on - strand, within Atu6173at 189.519 kb on - strand, within Atu6173at 189.521 kb on - strand, within Atu6173at 189.537 kb on - strandat 189.538 kb on + strandat 189.546 kb on - strandat 189.548 kb on + strandat 189.551 kb on - strandat 189.576 kb on + strandat 189.579 kb on - strandat 189.584 kb on + strandat 189.584 kb on + strandat 189.592 kb on - strandat 189.593 kb on + strandat 189.602 kb on + strandat 189.638 kb on + strand, within Atu6174at 189.645 kb on - strand, within Atu6174at 189.646 kb on - strand, within Atu6174at 189.652 kb on - strand, within Atu6174at 189.655 kb on - strand, within Atu6174at 189.665 kb on - strand, within Atu6174at 189.687 kb on + strand, within Atu6174at 189.710 kb on - strand, within Atu6174at 189.722 kb on + strand, within Atu6174at 189.722 kb on + strand, within Atu6174at 189.725 kb on - strand, within Atu6174at 189.730 kb on - strand, within Atu6174at 189.730 kb on - strand, within Atu6174at 189.730 kb on - strand, within Atu6174at 189.730 kb on - strand, within Atu6174at 189.735 kb on - strand, within Atu6174at 189.735 kb on - strand, within Atu6174at 189.735 kb on - strand, within Atu6174at 189.805 kb on - strand, within Atu6174at 189.810 kb on - strand, within Atu6174at 189.813 kb on - strand, within Atu6174at 189.846 kb on + strand, within Atu6174at 189.852 kb on - strand, within Atu6174at 189.889 kb on + strand, within Atu6174at 189.889 kb on + strand, within Atu6174at 189.889 kb on + strand, within Atu6174at 189.890 kb on - strand, within Atu6174at 189.892 kb on - strand, within Atu6174at 189.897 kb on - strand, within Atu6174at 189.897 kb on - strand, within Atu6174at 189.916 kb on + strand, within Atu6174at 189.924 kb on - strand, within Atu6174at 189.924 kb on - strand, within Atu6174at 190.000 kb on + strand, within Atu6174at 190.003 kb on - strand, within Atu6174at 190.030 kb on + strand, within Atu6174at 190.038 kb on - strand, within Atu6174at 190.111 kb on - strand, within Atu6174at 190.119 kb on - strand, within Atu6174at 190.153 kb on + strand, within Atu6174at 190.161 kb on - strand, within Atu6174at 190.171 kb on - strand, within Atu6174at 190.189 kb on + strandat 190.201 kb on + strandat 190.222 kb on + strandat 190.279 kb on - strandat 190.307 kb on - strandat 190.321 kb on + strandat 190.326 kb on + strandat 190.326 kb on + strandat 190.329 kb on - strandat 190.334 kb on - strand, within Atu6175at 190.386 kb on - strand, within Atu6175at 190.422 kb on - strand, within Atu6175at 190.448 kb on + strand, within Atu6175at 190.493 kb on - strand, within Atu6175

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Per-strain Table

Position Strand Gene LocusTag Fraction P3L5
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188,379 + -1.1
188,444 + -1.2
188,452 - +0.4
188,452 - -0.1
188,485 - +0.5
188,528 - -0.5
188,542 - +0.7
188,548 + Atu6172 0.11 +1.4
188,584 + Atu6172 0.15 +0.0
188,586 - Atu6172 0.15 +0.1
188,594 - Atu6172 0.16 +1.0
188,598 + Atu6172 0.16 -1.8
188,598 + Atu6172 0.16 +0.3
188,607 + Atu6172 0.17 +0.4
188,662 - Atu6172 0.23 -0.1
188,699 - Atu6172 0.28 +0.4
188,781 + Atu6172 0.37 +0.3
188,789 - Atu6172 0.38 +0.3
188,789 - Atu6172 0.38 +0.0
188,789 - Atu6172 0.38 -0.5
188,799 - Atu6172 0.39 -1.7
188,801 + Atu6172 0.39 +0.5
188,809 - Atu6172 0.40 -0.1
188,818 + Atu6172 0.41 +0.4
188,818 + Atu6172 0.41 +0.2
188,818 + Atu6172 0.41 -0.1
188,826 - Atu6172 0.42 -0.0
188,898 + Atu6172 0.50 +0.3
188,921 + Atu6172 0.53 +0.3
188,981 + Atu6172 0.59 +0.4
188,988 + Atu6172 0.60 +1.1
189,003 + Atu6172 0.62 +1.5
189,043 + Atu6172 0.66 +0.2
189,061 + Atu6172 0.68 -0.5
189,062 - Atu6172 0.68 +0.8
189,069 - Atu6172 0.69 -0.1
189,133 + Atu6172 0.76 -0.8
189,133 + Atu6172 0.76 -0.7
189,133 + Atu6172 0.76 -0.5
189,133 + Atu6172 0.76 -0.1
189,133 + Atu6172 0.76 -0.3
189,133 + Atu6172 0.76 +0.5
189,141 - Atu6172 0.77 -1.0
189,311 - +0.2
189,311 - +0.0
189,343 - +0.7
189,375 + +1.7
189,375 + +0.4
189,394 + Atu6173 0.10 -0.8
189,486 + Atu6173 0.65 -0.7
189,503 + Atu6173 0.75 -1.1
189,511 - Atu6173 0.80 +0.9
189,519 - Atu6173 0.85 +0.6
189,521 - Atu6173 0.86 -0.4
189,537 - +0.2
189,538 + -1.4
189,546 - -1.4
189,548 + +0.6
189,551 - +0.7
189,576 + +2.7
189,579 - +0.4
189,584 + -0.5
189,584 + -0.2
189,592 - +0.5
189,593 + -0.5
189,602 + +0.1
189,638 + Atu6174 0.15 +0.5
189,645 - Atu6174 0.16 -0.5
189,646 - Atu6174 0.16 -0.5
189,652 - Atu6174 0.17 +0.2
189,655 - Atu6174 0.17 -0.2
189,665 - Atu6174 0.19 +0.5
189,687 + Atu6174 0.22 +0.7
189,710 - Atu6174 0.25 -0.7
189,722 + Atu6174 0.27 +0.5
189,722 + Atu6174 0.27 +1.0
189,725 - Atu6174 0.27 -0.1
189,730 - Atu6174 0.28 +1.1
189,730 - Atu6174 0.28 -0.5
189,730 - Atu6174 0.28 -0.1
189,730 - Atu6174 0.28 +1.2
189,735 - Atu6174 0.29 +0.2
189,735 - Atu6174 0.29 -1.0
189,735 - Atu6174 0.29 +1.4
189,805 - Atu6174 0.38 +2.7
189,810 - Atu6174 0.39 +2.1
189,813 - Atu6174 0.39 +0.4
189,846 + Atu6174 0.44 +0.8
189,852 - Atu6174 0.45 -0.2
189,889 + Atu6174 0.50 +1.1
189,889 + Atu6174 0.50 +0.1
189,889 + Atu6174 0.50 +0.5
189,890 - Atu6174 0.50 +0.1
189,892 - Atu6174 0.51 -0.5
189,897 - Atu6174 0.51 +1.7
189,897 - Atu6174 0.51 -1.1
189,916 + Atu6174 0.54 -1.1
189,924 - Atu6174 0.55 -0.1
189,924 - Atu6174 0.55 -0.9
190,000 + Atu6174 0.66 +0.7
190,003 - Atu6174 0.66 +1.4
190,030 + Atu6174 0.70 +1.1
190,038 - Atu6174 0.71 +0.1
190,111 - Atu6174 0.81 -0.3
190,119 - Atu6174 0.82 -0.3
190,153 + Atu6174 0.87 +0.1
190,161 - Atu6174 0.88 +1.1
190,171 - Atu6174 0.90 -0.4
190,189 + +1.0
190,201 + -0.4
190,222 + -0.3
190,279 - +0.1
190,307 - -1.1
190,321 + +0.1
190,326 + -0.6
190,326 + -0.3
190,329 - -1.0
190,334 - Atu6175 0.11 -2.6
190,386 - Atu6175 0.16 -1.2
190,422 - Atu6175 0.21 +0.7
190,448 + Atu6175 0.23 +0.1
190,493 - Atu6175 0.29 +0.7

Or see this region's nucleotide sequence