Strain Fitness in Agrobacterium fabrum C58 around Atu6017

Experiment: P3L4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu6016 and Atu6017 overlap by 4 nucleotidesAtu6017 and Atu6018 are separated by 76 nucleotides Atu6016: Atu6016 - ornithine cyclodeaminase, at 24,980 to 26,095 Atu6016 Atu6017: Atu6017 - NAD/NADP octopine/nopaline dehydrogenase, at 26,092 to 27,174 Atu6017 Atu6018: Atu6018 - arginase, at 27,251 to 28,225 Atu6018 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 25.156 kb on - strand, within Atu6016at 25.187 kb on + strand, within Atu6016at 25.195 kb on - strand, within Atu6016at 25.195 kb on - strand, within Atu6016at 25.195 kb on - strand, within Atu6016at 25.205 kb on - strand, within Atu6016at 25.232 kb on - strand, within Atu6016at 25.232 kb on - strand, within Atu6016at 25.272 kb on + strand, within Atu6016at 25.301 kb on + strand, within Atu6016at 25.309 kb on - strand, within Atu6016at 25.328 kb on - strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.330 kb on + strand, within Atu6016at 25.374 kb on - strand, within Atu6016at 25.374 kb on - strand, within Atu6016at 25.383 kb on - strand, within Atu6016at 25.388 kb on + strand, within Atu6016at 25.401 kb on - strand, within Atu6016at 25.411 kb on + strand, within Atu6016at 25.425 kb on + strand, within Atu6016at 25.425 kb on + strand, within Atu6016at 25.464 kb on - strand, within Atu6016at 25.466 kb on + strand, within Atu6016at 25.485 kb on + strand, within Atu6016at 25.493 kb on + strand, within Atu6016at 25.495 kb on + strand, within Atu6016at 25.503 kb on - strand, within Atu6016at 25.525 kb on + strand, within Atu6016at 25.533 kb on - strand, within Atu6016at 25.560 kb on + strand, within Atu6016at 25.560 kb on + strand, within Atu6016at 25.565 kb on + strand, within Atu6016at 25.587 kb on + strand, within Atu6016at 25.608 kb on + strand, within Atu6016at 25.619 kb on - strand, within Atu6016at 25.621 kb on + strand, within Atu6016at 25.624 kb on - strand, within Atu6016at 25.655 kb on - strand, within Atu6016at 25.720 kb on + strand, within Atu6016at 25.762 kb on + strand, within Atu6016at 25.820 kb on + strand, within Atu6016at 25.828 kb on - strand, within Atu6016at 25.903 kb on + strand, within Atu6016at 25.958 kb on + strand, within Atu6016at 25.966 kb on - strand, within Atu6016at 26.004 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.019 kb on + strandat 26.027 kb on - strandat 26.043 kb on - strandat 26.052 kb on - strandat 26.055 kb on + strandat 26.076 kb on + strandat 26.132 kb on + strandat 26.136 kb on + strandat 26.154 kb on - strandat 26.167 kb on + strandat 26.167 kb on + strandat 26.214 kb on + strand, within Atu6017at 26.246 kb on + strand, within Atu6017at 26.254 kb on - strand, within Atu6017at 26.254 kb on - strand, within Atu6017at 26.254 kb on - strand, within Atu6017at 26.272 kb on - strand, within Atu6017at 26.280 kb on + strand, within Atu6017at 26.282 kb on + strand, within Atu6017at 26.282 kb on + strand, within Atu6017at 26.309 kb on - strand, within Atu6017at 26.314 kb on - strand, within Atu6017at 26.335 kb on + strand, within Atu6017at 26.455 kb on - strand, within Atu6017at 26.493 kb on + strand, within Atu6017at 26.495 kb on + strand, within Atu6017at 26.501 kb on - strand, within Atu6017at 26.530 kb on + strand, within Atu6017at 26.538 kb on - strand, within Atu6017at 26.575 kb on - strand, within Atu6017at 26.582 kb on + strand, within Atu6017at 26.585 kb on - strand, within Atu6017at 26.593 kb on + strand, within Atu6017at 26.619 kb on - strand, within Atu6017at 26.654 kb on + strand, within Atu6017at 26.709 kb on - strand, within Atu6017at 26.709 kb on - strand, within Atu6017at 26.717 kb on + strand, within Atu6017at 26.771 kb on + strand, within Atu6017at 26.779 kb on - strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.786 kb on + strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.794 kb on - strand, within Atu6017at 26.843 kb on + strand, within Atu6017at 26.868 kb on - strand, within Atu6017at 26.875 kb on + strand, within Atu6017at 26.917 kb on + strand, within Atu6017at 26.942 kb on - strand, within Atu6017at 26.942 kb on - strand, within Atu6017at 27.012 kb on + strand, within Atu6017at 27.012 kb on + strand, within Atu6017at 27.018 kb on - strand, within Atu6017at 27.020 kb on - strand, within Atu6017at 27.020 kb on - strand, within Atu6017at 27.025 kb on - strand, within Atu6017at 27.029 kb on + strand, within Atu6017at 27.030 kb on - strand, within Atu6017at 27.037 kb on - strand, within Atu6017at 27.099 kb on - strandat 27.107 kb on - strandat 27.132 kb on + strandat 27.142 kb on + strandat 27.167 kb on + strandat 27.205 kb on - strandat 27.215 kb on + strandat 27.243 kb on - strandat 27.243 kb on - strandat 27.261 kb on + strandat 27.269 kb on - strandat 27.301 kb on + strandat 27.312 kb on + strandat 27.387 kb on - strand, within Atu6018at 27.400 kb on - strand, within Atu6018at 27.450 kb on + strand, within Atu6018at 27.450 kb on + strand, within Atu6018at 27.460 kb on + strand, within Atu6018at 27.460 kb on + strand, within Atu6018at 27.468 kb on - strand, within Atu6018at 27.511 kb on + strand, within Atu6018at 27.521 kb on + strand, within Atu6018at 27.544 kb on - strand, within Atu6018at 27.551 kb on + strand, within Atu6018at 27.598 kb on + strand, within Atu6018at 27.608 kb on + strand, within Atu6018at 27.698 kb on + strand, within Atu6018at 27.703 kb on + strand, within Atu6018at 27.735 kb on + strand, within Atu6018at 27.754 kb on - strand, within Atu6018at 27.782 kb on + strand, within Atu6018at 27.785 kb on - strand, within Atu6018at 27.788 kb on - strand, within Atu6018at 27.788 kb on - strand, within Atu6018at 27.819 kb on - strand, within Atu6018at 27.825 kb on + strand, within Atu6018at 27.853 kb on + strand, within Atu6018at 27.856 kb on - strand, within Atu6018at 27.904 kb on + strand, within Atu6018at 27.907 kb on - strand, within Atu6018at 27.926 kb on + strand, within Atu6018at 27.936 kb on + strand, within Atu6018at 27.936 kb on + strand, within Atu6018at 27.936 kb on + strand, within Atu6018at 27.956 kb on - strand, within Atu6018at 27.965 kb on - strand, within Atu6018at 27.998 kb on - strand, within Atu6018at 27.998 kb on - strand, within Atu6018at 28.050 kb on + strand, within Atu6018at 28.055 kb on + strand, within Atu6018at 28.055 kb on + strand, within Atu6018at 28.058 kb on - strand, within Atu6018at 28.063 kb on - strand, within Atu6018at 28.063 kb on - strand, within Atu6018at 28.064 kb on + strand, within Atu6018at 28.121 kb on + strand, within Atu6018at 28.136 kb on + strandat 28.145 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P3L4
remove
25,156 - Atu6016 0.16 -0.8
25,187 + Atu6016 0.19 -1.2
25,195 - Atu6016 0.19 -0.4
25,195 - Atu6016 0.19 +0.7
25,195 - Atu6016 0.19 -0.9
25,205 - Atu6016 0.20 -0.7
25,232 - Atu6016 0.23 -2.0
25,232 - Atu6016 0.23 -0.7
25,272 + Atu6016 0.26 +0.7
25,301 + Atu6016 0.29 +1.6
25,309 - Atu6016 0.29 +0.0
25,328 - Atu6016 0.31 -0.1
25,330 + Atu6016 0.31 +1.0
25,330 + Atu6016 0.31 -1.2
25,330 + Atu6016 0.31 -0.1
25,330 + Atu6016 0.31 +1.0
25,374 - Atu6016 0.35 -1.0
25,374 - Atu6016 0.35 +0.0
25,383 - Atu6016 0.36 -2.9
25,388 + Atu6016 0.37 +0.6
25,401 - Atu6016 0.38 -3.0
25,411 + Atu6016 0.39 +0.4
25,425 + Atu6016 0.40 -0.3
25,425 + Atu6016 0.40 +0.4
25,464 - Atu6016 0.43 -1.2
25,466 + Atu6016 0.44 -1.2
25,485 + Atu6016 0.45 -0.7
25,493 + Atu6016 0.46 -1.4
25,495 + Atu6016 0.46 +0.4
25,503 - Atu6016 0.47 -0.7
25,525 + Atu6016 0.49 -2.6
25,533 - Atu6016 0.50 -0.8
25,560 + Atu6016 0.52 +1.0
25,560 + Atu6016 0.52 -1.1
25,565 + Atu6016 0.52 +0.1
25,587 + Atu6016 0.54 +0.0
25,608 + Atu6016 0.56 -2.2
25,619 - Atu6016 0.57 +0.0
25,621 + Atu6016 0.57 -0.3
25,624 - Atu6016 0.58 -1.3
25,655 - Atu6016 0.60 -1.2
25,720 + Atu6016 0.66 -0.6
25,762 + Atu6016 0.70 -1.8
25,820 + Atu6016 0.75 -0.8
25,828 - Atu6016 0.76 +1.0
25,903 + Atu6016 0.83 -1.6
25,958 + Atu6016 0.88 -0.3
25,966 - Atu6016 0.88 -2.1
26,004 + -1.5
26,019 + -1.8
26,019 + +0.7
26,019 + -1.6
26,019 + +0.0
26,019 + +0.0
26,019 + -2.1
26,019 + -0.6
26,019 + -0.1
26,027 - -0.8
26,043 - -1.3
26,052 - +0.4
26,055 + +0.0
26,076 + -0.3
26,132 + -1.0
26,136 + +2.0
26,154 - +0.0
26,167 + -2.1
26,167 + -0.6
26,214 + Atu6017 0.11 -0.8
26,246 + Atu6017 0.14 -1.0
26,254 - Atu6017 0.15 -1.2
26,254 - Atu6017 0.15 -0.4
26,254 - Atu6017 0.15 -0.1
26,272 - Atu6017 0.17 -0.9
26,280 + Atu6017 0.17 -0.7
26,282 + Atu6017 0.18 -1.0
26,282 + Atu6017 0.18 +0.7
26,309 - Atu6017 0.20 -1.0
26,314 - Atu6017 0.20 -0.1
26,335 + Atu6017 0.22 -1.4
26,455 - Atu6017 0.34 -0.8
26,493 + Atu6017 0.37 -2.0
26,495 + Atu6017 0.37 +0.4
26,501 - Atu6017 0.38 -1.0
26,530 + Atu6017 0.40 +0.2
26,538 - Atu6017 0.41 -1.0
26,575 - Atu6017 0.45 -3.1
26,582 + Atu6017 0.45 -0.6
26,585 - Atu6017 0.46 -0.8
26,593 + Atu6017 0.46 -1.1
26,619 - Atu6017 0.49 -1.7
26,654 + Atu6017 0.52 -0.2
26,709 - Atu6017 0.57 -1.3
26,709 - Atu6017 0.57 +1.4
26,717 + Atu6017 0.58 -1.8
26,771 + Atu6017 0.63 -0.2
26,779 - Atu6017 0.63 -0.7
26,786 + Atu6017 0.64 -1.0
26,786 + Atu6017 0.64 -1.2
26,786 + Atu6017 0.64 -2.0
26,786 + Atu6017 0.64 -0.8
26,794 - Atu6017 0.65 -0.6
26,794 - Atu6017 0.65 -1.3
26,794 - Atu6017 0.65 -1.1
26,794 - Atu6017 0.65 -1.0
26,843 + Atu6017 0.69 -0.2
26,868 - Atu6017 0.72 -0.6
26,875 + Atu6017 0.72 -1.8
26,917 + Atu6017 0.76 -0.9
26,942 - Atu6017 0.78 -0.8
26,942 - Atu6017 0.78 -1.1
27,012 + Atu6017 0.85 +0.4
27,012 + Atu6017 0.85 +0.0
27,018 - Atu6017 0.86 +0.2
27,020 - Atu6017 0.86 +0.3
27,020 - Atu6017 0.86 -1.4
27,025 - Atu6017 0.86 -0.1
27,029 + Atu6017 0.87 +0.3
27,030 - Atu6017 0.87 -1.2
27,037 - Atu6017 0.87 -1.1
27,099 - -1.8
27,107 - -0.6
27,132 + -1.1
27,142 + +2.0
27,167 + -0.9
27,205 - -0.0
27,215 + +0.6
27,243 - -0.7
27,243 - -1.3
27,261 + -1.4
27,269 - +1.7
27,301 + -0.2
27,312 + -0.6
27,387 - Atu6018 0.14 -0.1
27,400 - Atu6018 0.15 +0.0
27,450 + Atu6018 0.20 -0.2
27,450 + Atu6018 0.20 -0.4
27,460 + Atu6018 0.21 -0.2
27,460 + Atu6018 0.21 -1.8
27,468 - Atu6018 0.22 +1.0
27,511 + Atu6018 0.27 -0.2
27,521 + Atu6018 0.28 -0.6
27,544 - Atu6018 0.30 -0.8
27,551 + Atu6018 0.31 -0.6
27,598 + Atu6018 0.36 -0.8
27,608 + Atu6018 0.37 -1.3
27,698 + Atu6018 0.46 +0.4
27,703 + Atu6018 0.46 +0.8
27,735 + Atu6018 0.50 -1.2
27,754 - Atu6018 0.52 -0.8
27,782 + Atu6018 0.54 +3.0
27,785 - Atu6018 0.55 +1.4
27,788 - Atu6018 0.55 -1.0
27,788 - Atu6018 0.55 -0.7
27,819 - Atu6018 0.58 -0.7
27,825 + Atu6018 0.59 -2.3
27,853 + Atu6018 0.62 +0.0
27,856 - Atu6018 0.62 -1.0
27,904 + Atu6018 0.67 -1.8
27,907 - Atu6018 0.67 -0.7
27,926 + Atu6018 0.69 +0.0
27,936 + Atu6018 0.70 -0.9
27,936 + Atu6018 0.70 -1.4
27,936 + Atu6018 0.70 -0.2
27,956 - Atu6018 0.72 -0.5
27,965 - Atu6018 0.73 +0.0
27,998 - Atu6018 0.77 -0.7
27,998 - Atu6018 0.77 +1.0
28,050 + Atu6018 0.82 -3.6
28,055 + Atu6018 0.82 -1.0
28,055 + Atu6018 0.82 -0.6
28,058 - Atu6018 0.83 -3.0
28,063 - Atu6018 0.83 -0.8
28,063 - Atu6018 0.83 -0.1
28,064 + Atu6018 0.83 -1.3
28,121 + Atu6018 0.89 -1.8
28,136 + -0.5
28,145 - -0.4

Or see this region's nucleotide sequence