Strain Fitness in Agrobacterium fabrum C58 around Atu3546

Experiment: P2L5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3544 and Atu3545 are separated by 70 nucleotidesAtu3545 and Atu3546 are separated by 228 nucleotidesAtu3546 and Atu3547 are separated by 69 nucleotidesAtu3547 and Atu3548 are separated by 144 nucleotides Atu3544: Atu3544 - arsenical pump membrane protein, at 592,991 to 594,244 Atu3544 Atu3545: Atu3545 - hypothetical protein, at 594,315 to 594,644 Atu3545 Atu3546: Atu3546 - hypothetical protein, at 594,873 to 596,891 Atu3546 Atu3547: Atu3547 - hypothetical protein, at 596,961 to 597,617 Atu3547 Atu3548: Atu3548 - glycosyltransferase, at 597,762 to 598,988 Atu3548 Position (kb) 594 595 596 597Strain fitness (log2 ratio) -2 -1 0 1 2at 594.041 kb on + strand, within Atu3544at 594.065 kb on + strand, within Atu3544at 594.073 kb on - strand, within Atu3544at 594.073 kb on - strand, within Atu3544at 594.161 kb on - strandat 594.177 kb on + strandat 594.209 kb on + strandat 594.211 kb on - strandat 594.275 kb on - strandat 594.280 kb on - strandat 594.416 kb on - strand, within Atu3545at 594.441 kb on - strand, within Atu3545at 594.463 kb on - strand, within Atu3545at 594.463 kb on - strand, within Atu3545at 594.505 kb on + strand, within Atu3545at 594.551 kb on + strand, within Atu3545at 594.556 kb on + strand, within Atu3545at 594.617 kb on - strandat 594.673 kb on - strandat 594.758 kb on - strandat 594.826 kb on - strandat 594.837 kb on - strandat 594.888 kb on + strandat 594.891 kb on - strandat 594.908 kb on + strandat 594.916 kb on - strandat 594.916 kb on - strandat 594.984 kb on - strandat 595.329 kb on - strand, within Atu3546at 595.333 kb on + strand, within Atu3546at 595.333 kb on + strand, within Atu3546at 595.333 kb on + strand, within Atu3546at 595.333 kb on + strand, within Atu3546at 595.333 kb on + strand, within Atu3546at 595.333 kb on + strand, within Atu3546at 595.341 kb on - strand, within Atu3546at 595.341 kb on - strand, within Atu3546at 595.341 kb on - strand, within Atu3546at 595.341 kb on - strand, within Atu3546at 595.341 kb on - strand, within Atu3546at 595.341 kb on - strand, within Atu3546at 595.341 kb on - strand, within Atu3546at 595.351 kb on - strand, within Atu3546at 595.387 kb on - strand, within Atu3546at 595.395 kb on + strand, within Atu3546at 595.556 kb on + strand, within Atu3546at 595.556 kb on + strand, within Atu3546at 595.556 kb on + strand, within Atu3546at 595.564 kb on - strand, within Atu3546at 595.564 kb on - strand, within Atu3546at 595.771 kb on - strand, within Atu3546at 595.814 kb on - strand, within Atu3546at 595.902 kb on - strand, within Atu3546at 596.027 kb on - strand, within Atu3546at 596.302 kb on + strand, within Atu3546at 596.302 kb on + strand, within Atu3546at 596.302 kb on + strand, within Atu3546at 596.310 kb on - strand, within Atu3546at 596.386 kb on + strand, within Atu3546at 596.392 kb on - strand, within Atu3546at 596.392 kb on - strand, within Atu3546at 596.392 kb on - strand, within Atu3546at 596.415 kb on - strand, within Atu3546at 596.510 kb on + strand, within Atu3546at 596.537 kb on - strand, within Atu3546at 596.557 kb on - strand, within Atu3546at 596.618 kb on + strand, within Atu3546at 596.625 kb on + strand, within Atu3546at 596.626 kb on - strand, within Atu3546at 596.626 kb on - strand, within Atu3546at 596.673 kb on - strand, within Atu3546at 596.690 kb on + strandat 596.699 kb on + strandat 596.736 kb on - strandat 596.944 kb on - strandat 596.993 kb on - strandat 597.000 kb on - strandat 597.023 kb on + strandat 597.048 kb on + strand, within Atu3547at 597.107 kb on - strand, within Atu3547at 597.152 kb on - strand, within Atu3547at 597.158 kb on + strand, within Atu3547at 597.169 kb on + strand, within Atu3547at 597.169 kb on + strand, within Atu3547at 597.169 kb on + strand, within Atu3547at 597.169 kb on + strand, within Atu3547at 597.177 kb on - strand, within Atu3547at 597.219 kb on + strand, within Atu3547at 597.353 kb on + strand, within Atu3547at 597.381 kb on + strand, within Atu3547at 597.382 kb on + strand, within Atu3547at 597.389 kb on - strand, within Atu3547at 597.475 kb on - strand, within Atu3547at 597.487 kb on - strand, within Atu3547at 597.540 kb on + strand, within Atu3547at 597.547 kb on + strand, within Atu3547at 597.611 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P2L5
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594,041 + Atu3544 0.84 +2.0
594,065 + Atu3544 0.86 +1.8
594,073 - Atu3544 0.86 -0.6
594,073 - Atu3544 0.86 -0.2
594,161 - -0.4
594,177 + -0.0
594,209 + -0.1
594,211 - +0.3
594,275 - -0.5
594,280 - -0.3
594,416 - Atu3545 0.31 +1.4
594,441 - Atu3545 0.38 -0.0
594,463 - Atu3545 0.45 +1.2
594,463 - Atu3545 0.45 +2.7
594,505 + Atu3545 0.58 +0.4
594,551 + Atu3545 0.72 -0.5
594,556 + Atu3545 0.73 +1.5
594,617 - -0.5
594,673 - +0.0
594,758 - +0.4
594,826 - -0.4
594,837 - -0.3
594,888 + +1.7
594,891 - -1.2
594,908 + +1.6
594,916 - +0.6
594,916 - -0.7
594,984 - -0.4
595,329 - Atu3546 0.23 -0.1
595,333 + Atu3546 0.23 -2.1
595,333 + Atu3546 0.23 +0.1
595,333 + Atu3546 0.23 -0.4
595,333 + Atu3546 0.23 +1.7
595,333 + Atu3546 0.23 -0.4
595,333 + Atu3546 0.23 -0.9
595,341 - Atu3546 0.23 -1.0
595,341 - Atu3546 0.23 -0.4
595,341 - Atu3546 0.23 -0.1
595,341 - Atu3546 0.23 -2.1
595,341 - Atu3546 0.23 -0.0
595,341 - Atu3546 0.23 -1.6
595,341 - Atu3546 0.23 -1.0
595,351 - Atu3546 0.24 -0.3
595,387 - Atu3546 0.25 +0.1
595,395 + Atu3546 0.26 -0.6
595,556 + Atu3546 0.34 -0.2
595,556 + Atu3546 0.34 -0.3
595,556 + Atu3546 0.34 -0.7
595,564 - Atu3546 0.34 +0.7
595,564 - Atu3546 0.34 +0.1
595,771 - Atu3546 0.44 -0.3
595,814 - Atu3546 0.47 -0.7
595,902 - Atu3546 0.51 +0.4
596,027 - Atu3546 0.57 -0.6
596,302 + Atu3546 0.71 +0.1
596,302 + Atu3546 0.71 -0.5
596,302 + Atu3546 0.71 -0.3
596,310 - Atu3546 0.71 -0.3
596,386 + Atu3546 0.75 -0.6
596,392 - Atu3546 0.75 +0.4
596,392 - Atu3546 0.75 +2.7
596,392 - Atu3546 0.75 -0.4
596,415 - Atu3546 0.76 +0.1
596,510 + Atu3546 0.81 -2.2
596,537 - Atu3546 0.82 +0.8
596,557 - Atu3546 0.83 +0.1
596,618 + Atu3546 0.86 +2.0
596,625 + Atu3546 0.87 -0.2
596,626 - Atu3546 0.87 +1.7
596,626 - Atu3546 0.87 -0.8
596,673 - Atu3546 0.89 +1.1
596,690 + -0.1
596,699 + -0.1
596,736 - -1.1
596,944 - -1.2
596,993 - -0.1
597,000 - -0.2
597,023 + +0.3
597,048 + Atu3547 0.13 +0.7
597,107 - Atu3547 0.22 +0.5
597,152 - Atu3547 0.29 +0.0
597,158 + Atu3547 0.30 -2.5
597,169 + Atu3547 0.32 -1.4
597,169 + Atu3547 0.32 -0.0
597,169 + Atu3547 0.32 +0.6
597,169 + Atu3547 0.32 +0.3
597,177 - Atu3547 0.33 +0.3
597,219 + Atu3547 0.39 +0.3
597,353 + Atu3547 0.60 +0.1
597,381 + Atu3547 0.64 +0.8
597,382 + Atu3547 0.64 -1.1
597,389 - Atu3547 0.65 +0.3
597,475 - Atu3547 0.78 -0.6
597,487 - Atu3547 0.80 +0.1
597,540 + Atu3547 0.88 +0.9
597,547 + Atu3547 0.89 -0.9
597,611 + +0.3

Or see this region's nucleotide sequence