Experiment: P2L5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3217 and Atu3218 are separated by 125 nucleotides Atu3218 and Atu8029 are separated by 169 nucleotides Atu8029 and Atu3219 are separated by 81 nucleotides
Atu3217: Atu3217 - aspartate aminotransferase, at 231,610 to 232,728
Atu3217
Atu3218: Atu3218 - hypothetical protein, at 232,854 to 233,129
Atu3218
Atu8029: Atu8029 - hypothetical protein, at 233,299 to 233,427
Atu8029
Atu3219: Atu3219 - dihydroxy-acid dehydratase, at 233,509 to 235,320
Atu3219
Position (kb) 232
233
234 Strain fitness (log2 ratio) -2
-1
0
1
2 at 232.020 kb on + strand, within Atu3217 at 232.028 kb on - strand, within Atu3217 at 232.079 kb on + strand, within Atu3217 at 232.174 kb on - strand, within Atu3217 at 232.255 kb on - strand, within Atu3217 at 232.333 kb on - strand, within Atu3217 at 232.484 kb on - strand, within Atu3217 at 232.497 kb on - strand, within Atu3217 at 232.546 kb on - strand, within Atu3217 at 232.580 kb on - strand, within Atu3217 at 232.768 kb on + strand at 232.918 kb on + strand, within Atu3218 at 232.918 kb on + strand, within Atu3218 at 232.926 kb on - strand, within Atu3218 at 233.071 kb on - strand, within Atu3218 at 233.190 kb on - strand at 233.203 kb on + strand at 233.213 kb on + strand at 233.224 kb on + strand at 233.232 kb on - strand at 233.232 kb on - strand at 233.232 kb on - strand at 233.234 kb on + strand at 233.378 kb on + strand, within Atu8029 at 233.476 kb on - strand at 233.530 kb on + strand at 233.531 kb on + strand at 233.531 kb on + strand at 233.531 kb on + strand at 233.531 kb on + strand at 233.531 kb on + strand at 233.539 kb on - strand at 233.539 kb on - strand at 233.593 kb on - strand at 233.593 kb on - strand at 233.646 kb on + strand at 233.647 kb on + strand at 233.655 kb on - strand at 233.664 kb on - strand at 233.692 kb on + strand, within Atu3219 at 233.692 kb on + strand, within Atu3219 at 233.718 kb on - strand, within Atu3219 at 233.741 kb on - strand, within Atu3219 at 233.770 kb on - strand, within Atu3219 at 233.819 kb on - strand, within Atu3219 at 234.023 kb on + strand, within Atu3219 at 234.101 kb on - strand, within Atu3219
Per-strain Table
Position Strand Gene LocusTag Fraction P2L5 remove 232,020 + Atu3217 0.37 -0.4 232,028 - Atu3217 0.37 -1.3 232,079 + Atu3217 0.42 -1.3 232,174 - Atu3217 0.50 -1.8 232,255 - Atu3217 0.58 +1.2 232,333 - Atu3217 0.65 +0.4 232,484 - Atu3217 0.78 -0.3 232,497 - Atu3217 0.79 +1.7 232,546 - Atu3217 0.84 +2.1 232,580 - Atu3217 0.87 -0.0 232,768 + -0.8 232,918 + Atu3218 0.23 -0.7 232,918 + Atu3218 0.23 +0.3 232,926 - Atu3218 0.26 -0.6 233,071 - Atu3218 0.79 -1.3 233,190 - -0.4 233,203 + +0.5 233,213 + -0.2 233,224 + +1.2 233,232 - +0.9 233,232 - -0.3 233,232 - +1.5 233,234 + +0.4 233,378 + Atu8029 0.61 -0.5 233,476 - -0.5 233,530 + -0.8 233,531 + -1.9 233,531 + -0.6 233,531 + -1.3 233,531 + +1.5 233,531 + -1.0 233,539 - +0.2 233,539 - -1.2 233,593 - -1.8 233,593 - +0.5 233,646 + -1.1 233,647 + -1.3 233,655 - -0.5 233,664 - +0.8 233,692 + Atu3219 0.10 -1.6 233,692 + Atu3219 0.10 -0.8 233,718 - Atu3219 0.12 +0.2 233,741 - Atu3219 0.13 -0.6 233,770 - Atu3219 0.14 -0.7 233,819 - Atu3219 0.17 -0.5 234,023 + Atu3219 0.28 -1.2 234,101 - Atu3219 0.33 +0.0
Or see this region's nucleotide sequence