Experiment: P2L5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1733 and Atu1734 are separated by 153 nucleotides Atu1734 and Atu1735 are separated by 57 nucleotides Atu1735 and Atu1736 are separated by 6 nucleotides
Atu1733: Atu1733 - ribonucleoside-diphosphate reductase 2 alpha chain, at 1,717,324 to 1,721,142
Atu1733
Atu1734: Atu1734 - hypothetical protein, at 1,721,296 to 1,721,643
Atu1734
Atu1735: Atu1735 - hypothetical protein, at 1,721,701 to 1,721,988
Atu1735
Atu1736: Atu1736 - manganese transport protein, at 1,721,995 to 1,723,365
Atu1736
Position (kb)
1721
1722 Strain fitness (log2 ratio)
-1
0
1
2 at 1721.385 kb on + strand, within Atu1734 at 1721.636 kb on - strand at 1721.731 kb on - strand, within Atu1735 at 1721.759 kb on + strand, within Atu1735 at 1721.804 kb on - strand, within Atu1735 at 1721.862 kb on + strand, within Atu1735 at 1721.879 kb on + strand, within Atu1735 at 1721.892 kb on - strand, within Atu1735 at 1721.954 kb on - strand, within Atu1735 at 1722.106 kb on - strand at 1722.363 kb on - strand, within Atu1736 at 1722.378 kb on + strand, within Atu1736 at 1722.443 kb on + strand, within Atu1736 at 1722.550 kb on + strand, within Atu1736 at 1722.603 kb on - strand, within Atu1736
Per-strain Table
Position Strand Gene LocusTag Fraction P2L5 remove 1,721,385 + Atu1734 0.26 -1.0 1,721,636 - +0.7 1,721,731 - Atu1735 0.10 +0.5 1,721,759 + Atu1735 0.20 -1.0 1,721,804 - Atu1735 0.36 -0.0 1,721,862 + Atu1735 0.56 +2.3 1,721,879 + Atu1735 0.62 +0.1 1,721,892 - Atu1735 0.66 +0.1 1,721,954 - Atu1735 0.88 +0.0 1,722,106 - +0.5 1,722,363 - Atu1736 0.27 +0.5 1,722,378 + Atu1736 0.28 -0.7 1,722,443 + Atu1736 0.33 -0.6 1,722,550 + Atu1736 0.40 +0.7 1,722,603 - Atu1736 0.44 +0.4
Or see this region's nucleotide sequence