Experiment: P1L4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8063 and Atu6162 are separated by 583 nucleotides Atu6162 and Atu6163 are separated by 218 nucleotides
Atu8063: Atu8063 - hypothetical protein, at 176,512 to 176,823
Atu8063
Atu6162: Atu6162 - conserved hypothetical protein, at 177,407 to 178,117
Atu6162
Atu6163: Atu6163 - hypothetical protein, at 178,336 to 178,764
Atu6163
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 176.407 kb on + strand at 176.426 kb on - strand at 176.455 kb on + strand at 176.503 kb on + strand at 176.529 kb on - strand at 176.650 kb on + strand, within Atu8063 at 176.794 kb on - strand at 176.930 kb on - strand at 176.938 kb on + strand at 176.944 kb on + strand at 176.944 kb on + strand at 176.944 kb on + strand at 176.944 kb on + strand at 176.944 kb on + strand at 176.952 kb on - strand at 176.952 kb on - strand at 176.996 kb on + strand at 176.998 kb on - strand at 177.038 kb on - strand at 177.105 kb on - strand at 177.111 kb on + strand at 177.154 kb on + strand at 177.161 kb on - strand at 177.164 kb on - strand at 177.174 kb on + strand at 177.186 kb on - strand at 177.188 kb on + strand at 177.188 kb on + strand at 177.188 kb on + strand at 177.196 kb on - strand at 177.196 kb on - strand at 177.196 kb on - strand at 177.196 kb on - strand at 177.196 kb on - strand at 177.229 kb on - strand at 177.238 kb on + strand at 177.296 kb on + strand at 177.296 kb on + strand at 177.299 kb on - strand at 177.311 kb on + strand at 177.311 kb on + strand at 177.319 kb on - strand at 177.332 kb on - strand at 177.345 kb on + strand at 177.352 kb on + strand at 177.371 kb on + strand at 177.412 kb on + strand at 177.412 kb on + strand at 177.420 kb on - strand at 177.437 kb on + strand at 177.437 kb on + strand at 177.445 kb on - strand at 177.445 kb on - strand at 177.479 kb on - strand, within Atu6162 at 177.479 kb on - strand, within Atu6162 at 177.507 kb on + strand, within Atu6162 at 177.543 kb on - strand, within Atu6162 at 177.543 kb on - strand, within Atu6162 at 177.543 kb on - strand, within Atu6162 at 177.543 kb on - strand, within Atu6162 at 177.559 kb on + strand, within Atu6162 at 177.583 kb on - strand, within Atu6162 at 177.600 kb on - strand, within Atu6162 at 177.605 kb on - strand, within Atu6162 at 177.659 kb on - strand, within Atu6162 at 177.685 kb on - strand, within Atu6162 at 177.723 kb on - strand, within Atu6162 at 177.753 kb on + strand, within Atu6162 at 177.753 kb on + strand, within Atu6162 at 177.753 kb on + strand, within Atu6162 at 177.758 kb on + strand, within Atu6162 at 177.766 kb on - strand, within Atu6162 at 177.766 kb on - strand, within Atu6162 at 177.803 kb on + strand, within Atu6162 at 177.811 kb on + strand, within Atu6162 at 177.811 kb on - strand, within Atu6162 at 177.818 kb on + strand, within Atu6162 at 177.826 kb on - strand, within Atu6162 at 177.842 kb on - strand, within Atu6162 at 177.859 kb on + strand, within Atu6162 at 177.861 kb on + strand, within Atu6162 at 177.890 kb on + strand, within Atu6162 at 177.910 kb on + strand, within Atu6162 at 177.917 kb on + strand, within Atu6162 at 177.917 kb on + strand, within Atu6162 at 177.918 kb on - strand, within Atu6162 at 177.922 kb on + strand, within Atu6162 at 177.922 kb on + strand, within Atu6162 at 177.925 kb on - strand, within Atu6162 at 177.925 kb on - strand, within Atu6162 at 177.927 kb on + strand, within Atu6162 at 177.930 kb on - strand, within Atu6162 at 177.930 kb on - strand, within Atu6162 at 177.930 kb on - strand, within Atu6162 at 177.946 kb on - strand, within Atu6162 at 177.946 kb on - strand, within Atu6162 at 177.960 kb on + strand, within Atu6162 at 177.968 kb on - strand, within Atu6162 at 178.017 kb on + strand, within Atu6162 at 178.038 kb on + strand, within Atu6162 at 178.046 kb on - strand, within Atu6162 at 178.111 kb on + strand at 178.130 kb on + strand at 178.206 kb on + strand at 178.214 kb on - strand at 178.228 kb on + strand at 178.228 kb on + strand at 178.228 kb on + strand at 178.228 kb on + strand at 178.236 kb on - strand at 178.247 kb on - strand at 178.252 kb on + strand at 178.260 kb on - strand at 178.260 kb on - strand at 178.267 kb on + strand at 178.299 kb on - strand at 178.314 kb on + strand at 178.321 kb on - strand at 178.321 kb on - strand at 178.324 kb on + strand at 178.324 kb on + strand at 178.332 kb on - strand at 178.332 kb on - strand at 178.355 kb on - strand at 178.371 kb on - strand at 178.374 kb on + strand at 178.380 kb on + strand, within Atu6163 at 178.425 kb on + strand, within Atu6163 at 178.431 kb on - strand, within Atu6163 at 178.508 kb on - strand, within Atu6163 at 178.512 kb on + strand, within Atu6163 at 178.522 kb on - strand, within Atu6163 at 178.586 kb on + strand, within Atu6163 at 178.586 kb on + strand, within Atu6163 at 178.592 kb on + strand, within Atu6163 at 178.592 kb on + strand, within Atu6163 at 178.594 kb on - strand, within Atu6163 at 178.628 kb on - strand, within Atu6163 at 178.635 kb on + strand, within Atu6163 at 178.747 kb on + strand at 178.747 kb on + strand at 178.755 kb on - strand at 178.755 kb on - strand at 178.787 kb on + strand at 178.787 kb on + strand at 178.834 kb on - strand at 178.837 kb on + strand at 178.882 kb on + strand at 178.883 kb on - strand at 178.890 kb on - strand at 178.890 kb on - strand at 178.905 kb on + strand at 178.940 kb on - strand at 178.988 kb on - strand at 179.041 kb on + strand at 179.041 kb on + strand at 179.117 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P1L4 remove 176,407 + -0.8 176,426 - -0.7 176,455 + -2.5 176,503 + +0.1 176,529 - +0.4 176,650 + Atu8063 0.44 -0.3 176,794 - -0.4 176,930 - +0.4 176,938 + +2.1 176,944 + +0.3 176,944 + +0.8 176,944 + -0.5 176,944 + -0.8 176,944 + +0.0 176,952 - -0.3 176,952 - -0.2 176,996 + -1.8 176,998 - +2.3 177,038 - +0.6 177,105 - +0.3 177,111 + +0.3 177,154 + -0.2 177,161 - +0.2 177,164 - +3.7 177,174 + -0.2 177,186 - -0.7 177,188 + -1.1 177,188 + -1.3 177,188 + +0.7 177,196 - +0.1 177,196 - -0.6 177,196 - +1.1 177,196 - +0.3 177,196 - +0.9 177,229 - +1.3 177,238 + -0.0 177,296 + -0.4 177,296 + +0.0 177,299 - -0.1 177,311 + +0.4 177,311 + +2.3 177,319 - -0.1 177,332 - -0.9 177,345 + -0.6 177,352 + +0.6 177,371 + -0.3 177,412 + -0.1 177,412 + +0.6 177,420 - +2.1 177,437 + +0.5 177,437 + -0.1 177,445 - -0.2 177,445 - -0.3 177,479 - Atu6162 0.10 +1.3 177,479 - Atu6162 0.10 +0.3 177,507 + Atu6162 0.14 +0.6 177,543 - Atu6162 0.19 -1.5 177,543 - Atu6162 0.19 -0.1 177,543 - Atu6162 0.19 +0.2 177,543 - Atu6162 0.19 -0.3 177,559 + Atu6162 0.21 -2.4 177,583 - Atu6162 0.25 +0.0 177,600 - Atu6162 0.27 -0.3 177,605 - Atu6162 0.28 +1.8 177,659 - Atu6162 0.35 -1.1 177,685 - Atu6162 0.39 +0.2 177,723 - Atu6162 0.44 -0.5 177,753 + Atu6162 0.49 +0.3 177,753 + Atu6162 0.49 -0.3 177,753 + Atu6162 0.49 +0.0 177,758 + Atu6162 0.49 +0.5 177,766 - Atu6162 0.50 +0.4 177,766 - Atu6162 0.50 +0.2 177,803 + Atu6162 0.56 -0.9 177,811 + Atu6162 0.57 -0.1 177,811 - Atu6162 0.57 +0.2 177,818 + Atu6162 0.58 +0.3 177,826 - Atu6162 0.59 +0.3 177,842 - Atu6162 0.61 +0.2 177,859 + Atu6162 0.64 -0.4 177,861 + Atu6162 0.64 -1.1 177,890 + Atu6162 0.68 -0.1 177,910 + Atu6162 0.71 +0.4 177,917 + Atu6162 0.72 +0.8 177,917 + Atu6162 0.72 +0.7 177,918 - Atu6162 0.72 +0.6 177,922 + Atu6162 0.72 -0.7 177,922 + Atu6162 0.72 -0.2 177,925 - Atu6162 0.73 -0.2 177,925 - Atu6162 0.73 +0.6 177,927 + Atu6162 0.73 -1.0 177,930 - Atu6162 0.74 +0.3 177,930 - Atu6162 0.74 +0.2 177,930 - Atu6162 0.74 +0.5 177,946 - Atu6162 0.76 +0.4 177,946 - Atu6162 0.76 +0.3 177,960 + Atu6162 0.78 +0.3 177,968 - Atu6162 0.79 -0.5 178,017 + Atu6162 0.86 +0.2 178,038 + Atu6162 0.89 +1.3 178,046 - Atu6162 0.90 -0.2 178,111 + +1.9 178,130 + -0.3 178,206 + -0.2 178,214 - +0.7 178,228 + -1.0 178,228 + +0.7 178,228 + -0.8 178,228 + +0.9 178,236 - +0.6 178,247 - +0.0 178,252 + -0.7 178,260 - +0.1 178,260 - +0.7 178,267 + -0.0 178,299 - -0.3 178,314 + +1.2 178,321 - -0.1 178,321 - +0.5 178,324 + -0.9 178,324 + +1.0 178,332 - +0.2 178,332 - -0.2 178,355 - -1.7 178,371 - -0.3 178,374 + +1.0 178,380 + Atu6163 0.10 +0.6 178,425 + Atu6163 0.21 +1.7 178,431 - Atu6163 0.22 -0.7 178,508 - Atu6163 0.40 +0.3 178,512 + Atu6163 0.41 -0.3 178,522 - Atu6163 0.43 -0.8 178,586 + Atu6163 0.58 -1.3 178,586 + Atu6163 0.58 +0.3 178,592 + Atu6163 0.60 -0.8 178,592 + Atu6163 0.60 -0.1 178,594 - Atu6163 0.60 +0.0 178,628 - Atu6163 0.68 -0.3 178,635 + Atu6163 0.70 +0.4 178,747 + +0.1 178,747 + -1.7 178,755 - -0.4 178,755 - -0.1 178,787 + -1.0 178,787 + -0.6 178,834 - -0.3 178,837 + +0.5 178,882 + -0.4 178,883 - +1.3 178,890 - +0.3 178,890 - +0.2 178,905 + +0.6 178,940 - +0.7 178,988 - +1.1 179,041 + +0.3 179,041 + +1.3 179,117 - -0.5
Or see this region's nucleotide sequence