Experiment: P1L4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0161 and Atu0162 are separated by 6 nucleotides Atu0162 and Atu0163 overlap by 4 nucleotides Atu0163 and Atu0164 are separated by 142 nucleotides
Atu0161: Atu0161 - biopolymer transport protein, at 166,742 to 167,764
Atu0161
Atu0162: Atu0162 - biopolymer transport protein, at 167,771 to 168,274
Atu0162
Atu0163: Atu0163 - tonB protein, at 168,271 to 169,194
Atu0163
Atu0164: Atu0164 - putative malate dehydrogenase, at 169,337 to 170,326
Atu0164
Position (kb) 168
169
170 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 167.346 kb on + strand, within Atu0161 at 167.346 kb on + strand, within Atu0161 at 167.354 kb on - strand, within Atu0161 at 167.380 kb on + strand, within Atu0161 at 167.464 kb on + strand, within Atu0161 at 167.474 kb on + strand, within Atu0161 at 167.482 kb on - strand, within Atu0161 at 167.618 kb on + strand, within Atu0161 at 167.626 kb on - strand, within Atu0161 at 167.663 kb on + strand at 167.837 kb on + strand, within Atu0162 at 168.038 kb on + strand, within Atu0162 at 168.038 kb on + strand, within Atu0162 at 168.126 kb on + strand, within Atu0162 at 168.204 kb on - strand, within Atu0162 at 168.236 kb on - strand at 168.256 kb on + strand at 168.256 kb on + strand at 168.261 kb on + strand at 168.262 kb on - strand at 168.322 kb on + strand at 168.348 kb on - strand at 168.420 kb on + strand, within Atu0163 at 168.489 kb on + strand, within Atu0163 at 168.497 kb on - strand, within Atu0163 at 168.562 kb on + strand, within Atu0163 at 168.600 kb on + strand, within Atu0163 at 168.729 kb on + strand, within Atu0163 at 168.796 kb on - strand, within Atu0163 at 168.864 kb on + strand, within Atu0163 at 168.872 kb on - strand, within Atu0163 at 168.936 kb on + strand, within Atu0163 at 168.944 kb on - strand, within Atu0163 at 169.193 kb on - strand at 169.216 kb on + strand at 169.234 kb on + strand at 169.271 kb on + strand at 169.279 kb on - strand at 169.306 kb on - strand at 169.477 kb on - strand, within Atu0164 at 169.575 kb on + strand, within Atu0164 at 169.658 kb on - strand, within Atu0164 at 169.721 kb on + strand, within Atu0164 at 169.808 kb on + strand, within Atu0164 at 169.856 kb on + strand, within Atu0164 at 169.867 kb on + strand, within Atu0164 at 169.875 kb on - strand, within Atu0164 at 169.875 kb on - strand, within Atu0164 at 169.875 kb on - strand, within Atu0164 at 169.903 kb on + strand, within Atu0164 at 169.909 kb on + strand, within Atu0164 at 169.917 kb on - strand, within Atu0164 at 169.965 kb on + strand, within Atu0164 at 169.965 kb on + strand, within Atu0164 at 169.973 kb on - strand, within Atu0164 at 169.973 kb on - strand, within Atu0164 at 169.973 kb on - strand, within Atu0164 at 169.973 kb on - strand, within Atu0164 at 169.978 kb on - strand, within Atu0164 at 170.008 kb on + strand, within Atu0164 at 170.016 kb on + strand, within Atu0164 at 170.054 kb on - strand, within Atu0164 at 170.109 kb on - strand, within Atu0164 at 170.129 kb on - strand, within Atu0164 at 170.129 kb on - strand, within Atu0164
Per-strain Table
Position Strand Gene LocusTag Fraction P1L4 remove 167,346 + Atu0161 0.59 -2.5 167,346 + Atu0161 0.59 -1.8 167,354 - Atu0161 0.60 -3.3 167,380 + Atu0161 0.62 -2.1 167,464 + Atu0161 0.71 -2.0 167,474 + Atu0161 0.72 -3.0 167,482 - Atu0161 0.72 -1.1 167,618 + Atu0161 0.86 -1.3 167,626 - Atu0161 0.86 -0.8 167,663 + -1.5 167,837 + Atu0162 0.13 -4.3 168,038 + Atu0162 0.53 -1.8 168,038 + Atu0162 0.53 -3.9 168,126 + Atu0162 0.70 +0.5 168,204 - Atu0162 0.86 -1.1 168,236 - -2.6 168,256 + +0.1 168,256 + +0.3 168,261 + +0.1 168,262 - -0.5 168,322 + -2.2 168,348 - -3.1 168,420 + Atu0163 0.16 -3.7 168,489 + Atu0163 0.24 -0.5 168,497 - Atu0163 0.24 -3.2 168,562 + Atu0163 0.31 -3.7 168,600 + Atu0163 0.36 -3.8 168,729 + Atu0163 0.50 -1.5 168,796 - Atu0163 0.57 -2.2 168,864 + Atu0163 0.64 -1.6 168,872 - Atu0163 0.65 +0.5 168,936 + Atu0163 0.72 -3.8 168,944 - Atu0163 0.73 -0.9 169,193 - -1.1 169,216 + -1.3 169,234 + -0.3 169,271 + +0.7 169,279 - -0.0 169,306 - +0.0 169,477 - Atu0164 0.14 -0.2 169,575 + Atu0164 0.24 +1.1 169,658 - Atu0164 0.32 -0.6 169,721 + Atu0164 0.39 -0.2 169,808 + Atu0164 0.48 -0.0 169,856 + Atu0164 0.52 +0.2 169,867 + Atu0164 0.54 +0.3 169,875 - Atu0164 0.54 -0.1 169,875 - Atu0164 0.54 +0.4 169,875 - Atu0164 0.54 -0.1 169,903 + Atu0164 0.57 +0.5 169,909 + Atu0164 0.58 -0.1 169,917 - Atu0164 0.59 +0.7 169,965 + Atu0164 0.63 -0.2 169,965 + Atu0164 0.63 -0.5 169,973 - Atu0164 0.64 -1.3 169,973 - Atu0164 0.64 -0.8 169,973 - Atu0164 0.64 -0.1 169,973 - Atu0164 0.64 -0.6 169,978 - Atu0164 0.65 -0.8 170,008 + Atu0164 0.68 +1.1 170,016 + Atu0164 0.69 +0.1 170,054 - Atu0164 0.72 -0.1 170,109 - Atu0164 0.78 +0.5 170,129 - Atu0164 0.80 -0.6 170,129 - Atu0164 0.80 -0.2
Or see this region's nucleotide sequence