Experiment: P1L4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0160 and Atu0161 are separated by 265 nucleotides Atu0161 and Atu0162 are separated by 6 nucleotides Atu0162 and Atu0163 overlap by 4 nucleotides
Atu0160: Atu0160 - transcriptional regulator, GntR family, at 165,739 to 166,476
Atu0160
Atu0161: Atu0161 - biopolymer transport protein, at 166,742 to 167,764
Atu0161
Atu0162: Atu0162 - biopolymer transport protein, at 167,771 to 168,274
Atu0162
Atu0163: Atu0163 - tonB protein, at 168,271 to 169,194
Atu0163
Position (kb) 166
167
168 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 165.799 kb on + strand at 165.818 kb on - strand, within Atu0160 at 165.839 kb on + strand, within Atu0160 at 165.885 kb on + strand, within Atu0160 at 165.926 kb on - strand, within Atu0160 at 165.933 kb on + strand, within Atu0160 at 166.046 kb on - strand, within Atu0160 at 166.069 kb on - strand, within Atu0160 at 166.107 kb on - strand, within Atu0160 at 166.137 kb on + strand, within Atu0160 at 166.282 kb on + strand, within Atu0160 at 166.452 kb on + strand at 166.452 kb on + strand at 166.700 kb on + strand at 166.753 kb on - strand at 166.783 kb on - strand at 166.810 kb on + strand at 166.897 kb on + strand, within Atu0161 at 166.912 kb on + strand, within Atu0161 at 166.920 kb on - strand, within Atu0161 at 166.920 kb on - strand, within Atu0161 at 166.926 kb on + strand, within Atu0161 at 166.934 kb on - strand, within Atu0161 at 166.934 kb on - strand, within Atu0161 at 166.968 kb on - strand, within Atu0161 at 167.022 kb on + strand, within Atu0161 at 167.090 kb on + strand, within Atu0161 at 167.099 kb on + strand, within Atu0161 at 167.175 kb on - strand, within Atu0161 at 167.254 kb on + strand, within Atu0161 at 167.346 kb on + strand, within Atu0161 at 167.346 kb on + strand, within Atu0161 at 167.354 kb on - strand, within Atu0161 at 167.380 kb on + strand, within Atu0161 at 167.464 kb on + strand, within Atu0161 at 167.474 kb on + strand, within Atu0161 at 167.482 kb on - strand, within Atu0161 at 167.618 kb on + strand, within Atu0161 at 167.626 kb on - strand, within Atu0161 at 167.663 kb on + strand at 167.837 kb on + strand, within Atu0162 at 168.038 kb on + strand, within Atu0162 at 168.038 kb on + strand, within Atu0162 at 168.126 kb on + strand, within Atu0162 at 168.204 kb on - strand, within Atu0162 at 168.236 kb on - strand at 168.256 kb on + strand at 168.256 kb on + strand at 168.261 kb on + strand at 168.262 kb on - strand at 168.322 kb on + strand at 168.348 kb on - strand at 168.420 kb on + strand, within Atu0163 at 168.489 kb on + strand, within Atu0163 at 168.497 kb on - strand, within Atu0163 at 168.562 kb on + strand, within Atu0163 at 168.600 kb on + strand, within Atu0163 at 168.729 kb on + strand, within Atu0163
Per-strain Table
Position Strand Gene LocusTag Fraction P1L4 remove 165,799 + -1.1 165,818 - Atu0160 0.11 -0.2 165,839 + Atu0160 0.14 -0.3 165,885 + Atu0160 0.20 -0.1 165,926 - Atu0160 0.25 -0.4 165,933 + Atu0160 0.26 +0.1 166,046 - Atu0160 0.42 +0.4 166,069 - Atu0160 0.45 -0.2 166,107 - Atu0160 0.50 -0.1 166,137 + Atu0160 0.54 +0.3 166,282 + Atu0160 0.74 +0.6 166,452 + +0.1 166,452 + -0.3 166,700 + -1.6 166,753 - -4.2 166,783 - -3.8 166,810 + -2.6 166,897 + Atu0161 0.15 -2.7 166,912 + Atu0161 0.17 -4.0 166,920 - Atu0161 0.17 -1.6 166,920 - Atu0161 0.17 -4.6 166,926 + Atu0161 0.18 -2.4 166,934 - Atu0161 0.19 -2.9 166,934 - Atu0161 0.19 -2.3 166,968 - Atu0161 0.22 -1.4 167,022 + Atu0161 0.27 -4.6 167,090 + Atu0161 0.34 -4.4 167,099 + Atu0161 0.35 -5.0 167,175 - Atu0161 0.42 -2.2 167,254 + Atu0161 0.50 -0.5 167,346 + Atu0161 0.59 -2.5 167,346 + Atu0161 0.59 -1.8 167,354 - Atu0161 0.60 -3.3 167,380 + Atu0161 0.62 -2.1 167,464 + Atu0161 0.71 -2.0 167,474 + Atu0161 0.72 -3.0 167,482 - Atu0161 0.72 -1.1 167,618 + Atu0161 0.86 -1.3 167,626 - Atu0161 0.86 -0.8 167,663 + -1.5 167,837 + Atu0162 0.13 -4.3 168,038 + Atu0162 0.53 -1.8 168,038 + Atu0162 0.53 -3.9 168,126 + Atu0162 0.70 +0.5 168,204 - Atu0162 0.86 -1.1 168,236 - -2.6 168,256 + +0.1 168,256 + +0.3 168,261 + +0.1 168,262 - -0.5 168,322 + -2.2 168,348 - -3.1 168,420 + Atu0163 0.16 -3.7 168,489 + Atu0163 0.24 -0.5 168,497 - Atu0163 0.24 -3.2 168,562 + Atu0163 0.31 -3.7 168,600 + Atu0163 0.36 -3.8 168,729 + Atu0163 0.50 -1.5
Or see this region's nucleotide sequence