Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4171 and PP_4172 overlap by 1 nucleotides PP_4172 and PP_4173 overlap by 4 nucleotides PP_4173 and PP_4174 are separated by 207 nucleotides PP_4174 and PP_4175 are separated by 11 nucleotides
PP_4171: PP_4171 - conserved exported protein of unknown function, at 4,711,769 to 4,713,883
_4171
PP_4172: PP_4172 - conserved exported protein of unknown function, at 4,713,883 to 4,714,773
_4172
PP_4173: PP_4173 - Sensor histidine kinase/response regulator, at 4,714,770 to 4,716,701
_4173
PP_4174: PP_4174 - 3R-3-hydroxydecanoyl acyl carrier protein (ACP) dehydratase, at 4,716,909 to 4,717,424
_4174
PP_4175: PP_4175 - 3-oxoacyl-[acyl-carrier-protein] synthase 1, at 4,717,436 to 4,718,656
_4175
Position (kb) 4714
4715
4716
4717 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4713.836 kb on + strand at 4713.837 kb on - strand at 4713.983 kb on + strand, within PP_4172 at 4713.984 kb on - strand, within PP_4172 at 4713.984 kb on - strand, within PP_4172 at 4713.984 kb on - strand, within PP_4172 at 4713.984 kb on - strand, within PP_4172 at 4714.270 kb on + strand, within PP_4172 at 4714.271 kb on - strand, within PP_4172 at 4714.307 kb on - strand, within PP_4172 at 4714.471 kb on + strand, within PP_4172 at 4714.471 kb on + strand, within PP_4172 at 4714.511 kb on - strand, within PP_4172 at 4714.511 kb on - strand, within PP_4172 at 4714.576 kb on - strand, within PP_4172 at 4714.580 kb on - strand, within PP_4172 at 4714.580 kb on - strand, within PP_4172 at 4714.580 kb on - strand, within PP_4172 at 4714.800 kb on - strand at 4714.873 kb on + strand at 4715.064 kb on + strand, within PP_4173 at 4715.205 kb on + strand, within PP_4173 at 4715.205 kb on + strand, within PP_4173 at 4715.205 kb on + strand, within PP_4173 at 4715.463 kb on - strand, within PP_4173 at 4715.674 kb on - strand, within PP_4173 at 4715.938 kb on + strand, within PP_4173 at 4716.124 kb on - strand, within PP_4173 at 4716.187 kb on + strand, within PP_4173 at 4716.188 kb on - strand, within PP_4173 at 4716.188 kb on - strand, within PP_4173 at 4716.290 kb on - strand, within PP_4173 at 4716.319 kb on + strand, within PP_4173 at 4716.320 kb on - strand, within PP_4173 at 4716.391 kb on + strand, within PP_4173 at 4716.391 kb on + strand, within PP_4173 at 4716.391 kb on + strand, within PP_4173 at 4716.391 kb on + strand, within PP_4173 at 4716.392 kb on - strand, within PP_4173 at 4716.392 kb on - strand, within PP_4173 at 4716.490 kb on - strand, within PP_4173 at 4716.490 kb on - strand, within PP_4173 at 4716.610 kb on - strand at 4716.820 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs remove 4,713,836 + +1.1 4,713,837 - +0.2 4,713,983 + PP_4172 0.11 -1.7 4,713,984 - PP_4172 0.11 -1.2 4,713,984 - PP_4172 0.11 -1.4 4,713,984 - PP_4172 0.11 -1.1 4,713,984 - PP_4172 0.11 +0.3 4,714,270 + PP_4172 0.43 +0.4 4,714,271 - PP_4172 0.44 +0.4 4,714,307 - PP_4172 0.48 +0.8 4,714,471 + PP_4172 0.66 -2.3 4,714,471 + PP_4172 0.66 -0.6 4,714,511 - PP_4172 0.70 +0.5 4,714,511 - PP_4172 0.70 -0.2 4,714,576 - PP_4172 0.78 -1.4 4,714,580 - PP_4172 0.78 +0.8 4,714,580 - PP_4172 0.78 -2.8 4,714,580 - PP_4172 0.78 +0.0 4,714,800 - +0.7 4,714,873 + -0.2 4,715,064 + PP_4173 0.15 +1.2 4,715,205 + PP_4173 0.23 -0.1 4,715,205 + PP_4173 0.23 +0.1 4,715,205 + PP_4173 0.23 -0.3 4,715,463 - PP_4173 0.36 +0.0 4,715,674 - PP_4173 0.47 +0.5 4,715,938 + PP_4173 0.60 +0.4 4,716,124 - PP_4173 0.70 +0.6 4,716,187 + PP_4173 0.73 +0.8 4,716,188 - PP_4173 0.73 +1.1 4,716,188 - PP_4173 0.73 +0.3 4,716,290 - PP_4173 0.79 +0.7 4,716,319 + PP_4173 0.80 +0.6 4,716,320 - PP_4173 0.80 -3.4 4,716,391 + PP_4173 0.84 +0.8 4,716,391 + PP_4173 0.84 +1.4 4,716,391 + PP_4173 0.84 +0.5 4,716,391 + PP_4173 0.84 -0.0 4,716,392 - PP_4173 0.84 -0.1 4,716,392 - PP_4173 0.84 -1.4 4,716,490 - PP_4173 0.89 -0.2 4,716,490 - PP_4173 0.89 +2.1 4,716,610 - +2.0 4,716,820 + -0.4
Or see this region's nucleotide sequence