Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4915 and PP_4916 are separated by 35 nucleotides PP_4916 and PP_4917 are separated by 131 nucleotides
PP_4915: PP_4915 - DNA topoisomerase IV subunit B, at 5,587,243 to 5,589,147
_4915
PP_4916: PP_4916 - putative esterase, at 5,589,183 to 5,589,791
_4916
PP_4917: PP_4917 - 3',5'-cyclic-nucleotide phosphodiesterase, at 5,589,923 to 5,590,723
_4917
Position (kb) 5589
5590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5589.212 kb on - strand at 5589.322 kb on + strand, within PP_4916 at 5589.323 kb on - strand, within PP_4916 at 5589.466 kb on + strand, within PP_4916 at 5589.466 kb on + strand, within PP_4916 at 5589.574 kb on + strand, within PP_4916 at 5589.574 kb on + strand, within PP_4916 at 5589.574 kb on + strand, within PP_4916 at 5589.574 kb on + strand, within PP_4916 at 5589.574 kb on + strand, within PP_4916 at 5589.574 kb on + strand, within PP_4916 at 5589.575 kb on - strand, within PP_4916 at 5589.575 kb on - strand, within PP_4916 at 5589.770 kb on + strand at 5589.771 kb on - strand at 5589.771 kb on - strand at 5589.772 kb on + strand at 5589.772 kb on + strand at 5589.772 kb on + strand at 5589.772 kb on + strand at 5589.772 kb on + strand at 5589.773 kb on - strand at 5589.825 kb on - strand at 5589.927 kb on + strand at 5590.151 kb on + strand, within PP_4917 at 5590.152 kb on - strand, within PP_4917 at 5590.152 kb on - strand, within PP_4917 at 5590.163 kb on + strand, within PP_4917 at 5590.164 kb on - strand, within PP_4917 at 5590.164 kb on - strand, within PP_4917 at 5590.186 kb on + strand, within PP_4917 at 5590.518 kb on + strand, within PP_4917 at 5590.518 kb on + strand, within PP_4917 at 5590.518 kb on + strand, within PP_4917 at 5590.519 kb on - strand, within PP_4917 at 5590.519 kb on - strand, within PP_4917 at 5590.519 kb on - strand, within PP_4917 at 5590.519 kb on - strand, within PP_4917 at 5590.519 kb on - strand, within PP_4917 at 5590.519 kb on - strand, within PP_4917 at 5590.756 kb on + strand at 5590.756 kb on + strand at 5590.757 kb on - strand at 5590.757 kb on - strand at 5590.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs remove 5,589,212 - +0.0 5,589,322 + PP_4916 0.23 -0.5 5,589,323 - PP_4916 0.23 -0.4 5,589,466 + PP_4916 0.46 +1.5 5,589,466 + PP_4916 0.46 +0.1 5,589,574 + PP_4916 0.64 -0.7 5,589,574 + PP_4916 0.64 +0.8 5,589,574 + PP_4916 0.64 +0.2 5,589,574 + PP_4916 0.64 +0.1 5,589,574 + PP_4916 0.64 +0.7 5,589,574 + PP_4916 0.64 +0.7 5,589,575 - PP_4916 0.64 +1.0 5,589,575 - PP_4916 0.64 +0.8 5,589,770 + -0.3 5,589,771 - -0.2 5,589,771 - +1.0 5,589,772 + -1.5 5,589,772 + -0.2 5,589,772 + -0.4 5,589,772 + +0.4 5,589,772 + -0.8 5,589,773 - -2.3 5,589,825 - +1.5 5,589,927 + +0.3 5,590,151 + PP_4917 0.28 +0.5 5,590,152 - PP_4917 0.29 +0.3 5,590,152 - PP_4917 0.29 -0.2 5,590,163 + PP_4917 0.30 +0.2 5,590,164 - PP_4917 0.30 -1.2 5,590,164 - PP_4917 0.30 -0.2 5,590,186 + PP_4917 0.33 +1.8 5,590,518 + PP_4917 0.74 -1.0 5,590,518 + PP_4917 0.74 -0.6 5,590,518 + PP_4917 0.74 -0.5 5,590,519 - PP_4917 0.74 +0.6 5,590,519 - PP_4917 0.74 -0.6 5,590,519 - PP_4917 0.74 -0.4 5,590,519 - PP_4917 0.74 -0.6 5,590,519 - PP_4917 0.74 -1.1 5,590,519 - PP_4917 0.74 +1.3 5,590,756 + -0.8 5,590,756 + -1.9 5,590,757 - +0.3 5,590,757 - +0.1 5,590,757 - +0.5
Or see this region's nucleotide sequence