Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4624 and PP_4625 are separated by 176 nucleotides PP_4625 and PP_4626 overlap by 11 nucleotides PP_4626 and PP_4627 are separated by 97 nucleotides
PP_4624: PP_4624 - putative hydrolase, alpha/beta fold family, at 5,248,916 to 5,249,821
_4624
PP_4625: PP_4625 - anti-holin regulator of holin CidA, at 5,249,998 to 5,250,684
_4625
PP_4626: PP_4626 - holin regulator of murein hydrolases, at 5,250,674 to 5,251,060
_4626
PP_4627: PP_4627 - transcriptional regulator, LysR family, at 5,251,158 to 5,252,039
_4627
Position (kb) 5249
5250
5251 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5249.005 kb on + strand at 5249.005 kb on + strand at 5249.030 kb on + strand, within PP_4624 at 5249.031 kb on - strand, within PP_4624 at 5249.137 kb on + strand, within PP_4624 at 5249.137 kb on + strand, within PP_4624 at 5249.137 kb on + strand, within PP_4624 at 5249.137 kb on + strand, within PP_4624 at 5249.138 kb on - strand, within PP_4624 at 5249.190 kb on + strand, within PP_4624 at 5249.289 kb on + strand, within PP_4624 at 5249.289 kb on + strand, within PP_4624 at 5249.289 kb on + strand, within PP_4624 at 5249.289 kb on + strand, within PP_4624 at 5249.290 kb on - strand, within PP_4624 at 5249.305 kb on + strand, within PP_4624 at 5249.305 kb on + strand, within PP_4624 at 5249.305 kb on + strand, within PP_4624 at 5249.305 kb on + strand, within PP_4624 at 5249.305 kb on + strand, within PP_4624 at 5249.381 kb on + strand, within PP_4624 at 5249.381 kb on + strand, within PP_4624 at 5249.381 kb on + strand, within PP_4624 at 5249.382 kb on - strand, within PP_4624 at 5249.382 kb on - strand, within PP_4624 at 5249.382 kb on - strand, within PP_4624 at 5249.382 kb on - strand, within PP_4624 at 5249.580 kb on + strand, within PP_4624 at 5249.580 kb on + strand, within PP_4624 at 5249.581 kb on - strand, within PP_4624 at 5249.581 kb on - strand, within PP_4624 at 5249.671 kb on - strand, within PP_4624 at 5249.671 kb on - strand, within PP_4624 at 5249.705 kb on + strand, within PP_4624 at 5249.705 kb on + strand, within PP_4624 at 5249.705 kb on + strand, within PP_4624 at 5249.743 kb on - strand at 5249.743 kb on - strand at 5249.838 kb on + strand at 5249.838 kb on + strand at 5249.838 kb on + strand at 5249.838 kb on + strand at 5249.838 kb on + strand at 5249.839 kb on - strand at 5249.845 kb on - strand at 5249.855 kb on + strand at 5249.856 kb on - strand at 5249.856 kb on - strand at 5249.856 kb on - strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.894 kb on + strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.895 kb on - strand at 5249.907 kb on + strand at 5249.907 kb on + strand at 5249.908 kb on - strand at 5249.908 kb on - strand at 5249.908 kb on - strand at 5249.908 kb on - strand at 5249.908 kb on - strand at 5250.037 kb on - strand at 5250.162 kb on + strand, within PP_4625 at 5250.524 kb on + strand, within PP_4625 at 5250.594 kb on - strand, within PP_4625 at 5250.611 kb on + strand, within PP_4625 at 5250.612 kb on - strand, within PP_4625 at 5250.612 kb on - strand, within PP_4625 at 5250.632 kb on + strand at 5250.731 kb on + strand, within PP_4626 at 5250.731 kb on + strand, within PP_4626 at 5250.731 kb on + strand, within PP_4626 at 5250.732 kb on - strand, within PP_4626 at 5250.741 kb on - strand, within PP_4626 at 5250.741 kb on - strand, within PP_4626 at 5250.804 kb on + strand, within PP_4626 at 5250.914 kb on + strand, within PP_4626 at 5250.914 kb on + strand, within PP_4626 at 5250.914 kb on + strand, within PP_4626 at 5250.915 kb on - strand, within PP_4626 at 5250.915 kb on - strand, within PP_4626 at 5251.046 kb on + strand at 5251.046 kb on + strand at 5251.046 kb on + strand at 5251.047 kb on - strand at 5251.089 kb on + strand at 5251.435 kb on + strand, within PP_4627 at 5251.436 kb on - strand, within PP_4627 at 5251.436 kb on - strand, within PP_4627 at 5251.436 kb on - strand, within PP_4627 at 5251.624 kb on - strand, within PP_4627
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs remove 5,249,005 + +0.6 5,249,005 + +0.2 5,249,030 + PP_4624 0.13 -0.4 5,249,031 - PP_4624 0.13 +0.3 5,249,137 + PP_4624 0.24 -0.2 5,249,137 + PP_4624 0.24 +0.2 5,249,137 + PP_4624 0.24 -0.1 5,249,137 + PP_4624 0.24 +0.2 5,249,138 - PP_4624 0.25 +1.2 5,249,190 + PP_4624 0.30 -0.1 5,249,289 + PP_4624 0.41 +0.1 5,249,289 + PP_4624 0.41 +1.0 5,249,289 + PP_4624 0.41 -1.3 5,249,289 + PP_4624 0.41 -0.1 5,249,290 - PP_4624 0.41 -0.1 5,249,305 + PP_4624 0.43 +0.4 5,249,305 + PP_4624 0.43 +0.7 5,249,305 + PP_4624 0.43 +0.5 5,249,305 + PP_4624 0.43 +0.4 5,249,305 + PP_4624 0.43 +0.4 5,249,381 + PP_4624 0.51 +0.3 5,249,381 + PP_4624 0.51 +0.6 5,249,381 + PP_4624 0.51 -0.8 5,249,382 - PP_4624 0.51 -0.3 5,249,382 - PP_4624 0.51 -0.5 5,249,382 - PP_4624 0.51 -1.1 5,249,382 - PP_4624 0.51 -0.2 5,249,580 + PP_4624 0.73 +0.2 5,249,580 + PP_4624 0.73 +0.5 5,249,581 - PP_4624 0.73 +1.0 5,249,581 - PP_4624 0.73 -0.5 5,249,671 - PP_4624 0.83 +0.1 5,249,671 - PP_4624 0.83 -0.3 5,249,705 + PP_4624 0.87 +0.8 5,249,705 + PP_4624 0.87 +1.1 5,249,705 + PP_4624 0.87 +1.0 5,249,743 - +0.5 5,249,743 - -0.4 5,249,838 + -1.9 5,249,838 + -1.1 5,249,838 + -0.0 5,249,838 + +0.1 5,249,838 + +0.0 5,249,839 - -0.7 5,249,845 - +0.3 5,249,855 + -0.1 5,249,856 - +0.9 5,249,856 - -0.6 5,249,856 - +0.9 5,249,894 + -0.3 5,249,894 + -0.3 5,249,894 + -0.6 5,249,894 + +0.0 5,249,894 + +0.1 5,249,894 + -0.5 5,249,894 + -0.4 5,249,894 + +0.4 5,249,894 + +0.9 5,249,895 - +0.3 5,249,895 - +0.2 5,249,895 - +0.2 5,249,895 - -1.3 5,249,895 - +0.1 5,249,895 - -0.7 5,249,895 - +0.0 5,249,895 - +1.3 5,249,907 + +1.2 5,249,907 + -0.3 5,249,908 - +0.0 5,249,908 - +0.4 5,249,908 - +0.0 5,249,908 - -0.8 5,249,908 - +0.4 5,250,037 - -0.9 5,250,162 + PP_4625 0.24 +0.8 5,250,524 + PP_4625 0.77 -0.2 5,250,594 - PP_4625 0.87 +0.9 5,250,611 + PP_4625 0.89 +0.5 5,250,612 - PP_4625 0.89 +0.7 5,250,612 - PP_4625 0.89 -0.5 5,250,632 + +0.1 5,250,731 + PP_4626 0.15 -1.4 5,250,731 + PP_4626 0.15 -0.4 5,250,731 + PP_4626 0.15 -0.3 5,250,732 - PP_4626 0.15 +0.2 5,250,741 - PP_4626 0.17 +0.4 5,250,741 - PP_4626 0.17 -0.1 5,250,804 + PP_4626 0.34 +0.1 5,250,914 + PP_4626 0.62 +0.3 5,250,914 + PP_4626 0.62 +0.2 5,250,914 + PP_4626 0.62 -0.3 5,250,915 - PP_4626 0.62 -2.5 5,250,915 - PP_4626 0.62 +0.9 5,251,046 + -0.5 5,251,046 + +0.1 5,251,046 + -0.1 5,251,047 - +0.3 5,251,089 + +3.1 5,251,435 + PP_4627 0.31 -0.5 5,251,436 - PP_4627 0.32 -0.4 5,251,436 - PP_4627 0.32 -1.3 5,251,436 - PP_4627 0.32 -0.4 5,251,624 - PP_4627 0.53 -0.4
Or see this region's nucleotide sequence