Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0678 and PP_0679 are separated by 71 nucleotides PP_0679 and PP_0680 are separated by 223 nucleotides PP_0680 and PP_0681 are separated by 162 nucleotides PP_0681 and PP_0682 are separated by 189 nucleotides
PP_0678: PP_0678 - conserved exported protein of unknown function, at 791,195 to 793,048
_0678
PP_0679: PP_0679 - conserved exported protein of unknown function, at 793,120 to 793,635
_0679
PP_0680: PP_0680 - ATP-dependent protease-like protein, at 793,859 to 796,297
_0680
PP_0681: PP_0681 - conserved protein of unknown function, at 796,460 to 796,798
_0681
PP_0682: PP_0682 - conserved inner membrane protein of unknown function, UPF0114 family, at 796,988 to 797,476
_0682
Position (kb) 793
794
795
796
797 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 792.891 kb on + strand at 792.891 kb on + strand at 792.891 kb on + strand at 792.891 kb on + strand at 792.892 kb on - strand at 792.892 kb on - strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.925 kb on - strand at 792.925 kb on - strand at 793.059 kb on + strand at 793.060 kb on - strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.121 kb on + strand at 793.122 kb on - strand at 793.132 kb on - strand at 793.136 kb on + strand at 793.136 kb on + strand at 793.136 kb on + strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.137 kb on - strand at 793.257 kb on - strand, within PP_0679 at 793.257 kb on - strand, within PP_0679 at 793.276 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.295 kb on + strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.296 kb on - strand, within PP_0679 at 793.385 kb on + strand, within PP_0679 at 793.386 kb on - strand, within PP_0679 at 793.467 kb on + strand, within PP_0679 at 793.608 kb on + strand at 793.608 kb on + strand at 793.609 kb on - strand at 793.609 kb on - strand at 793.777 kb on + strand at 793.777 kb on + strand at 793.777 kb on + strand at 793.777 kb on + strand at 793.778 kb on - strand at 793.778 kb on - strand at 793.778 kb on - strand at 793.830 kb on + strand at 793.831 kb on - strand at 793.831 kb on - strand at 793.847 kb on + strand at 793.847 kb on + strand at 793.939 kb on + strand at 794.037 kb on - strand at 794.045 kb on + strand at 794.045 kb on + strand at 794.045 kb on + strand at 794.046 kb on - strand at 794.046 kb on - strand at 794.046 kb on - strand at 794.142 kb on - strand, within PP_0680 at 794.142 kb on - strand, within PP_0680 at 794.282 kb on + strand, within PP_0680 at 794.327 kb on + strand, within PP_0680 at 794.328 kb on - strand, within PP_0680 at 794.328 kb on - strand, within PP_0680 at 794.328 kb on - strand, within PP_0680 at 794.328 kb on - strand, within PP_0680 at 794.328 kb on - strand, within PP_0680 at 794.384 kb on + strand, within PP_0680 at 794.666 kb on + strand, within PP_0680 at 794.667 kb on - strand, within PP_0680 at 794.698 kb on + strand, within PP_0680 at 794.698 kb on + strand, within PP_0680 at 794.699 kb on - strand, within PP_0680 at 794.699 kb on - strand, within PP_0680 at 794.699 kb on - strand, within PP_0680 at 794.769 kb on - strand, within PP_0680 at 794.841 kb on - strand, within PP_0680 at 794.867 kb on + strand, within PP_0680 at 794.868 kb on - strand, within PP_0680 at 794.891 kb on + strand, within PP_0680 at 794.891 kb on + strand, within PP_0680 at 794.891 kb on + strand, within PP_0680 at 794.891 kb on + strand, within PP_0680 at 794.891 kb on + strand at 794.891 kb on + strand, within PP_0680 at 794.892 kb on - strand, within PP_0680 at 794.892 kb on - strand, within PP_0680 at 794.892 kb on - strand, within PP_0680 at 794.892 kb on - strand at 794.892 kb on - strand, within PP_0680 at 794.892 kb on - strand, within PP_0680 at 794.893 kb on + strand, within PP_0680 at 794.893 kb on + strand, within PP_0680 at 794.893 kb on + strand, within PP_0680 at 794.894 kb on - strand, within PP_0680 at 794.894 kb on - strand, within PP_0680 at 794.894 kb on - strand, within PP_0680 at 794.988 kb on + strand, within PP_0680 at 795.137 kb on + strand, within PP_0680 at 795.137 kb on + strand, within PP_0680 at 795.137 kb on + strand, within PP_0680 at 795.138 kb on - strand, within PP_0680 at 795.138 kb on - strand, within PP_0680 at 795.138 kb on - strand, within PP_0680 at 795.141 kb on - strand, within PP_0680 at 795.141 kb on - strand, within PP_0680 at 795.141 kb on - strand, within PP_0680 at 795.141 kb on - strand, within PP_0680 at 795.141 kb on - strand, within PP_0680 at 795.320 kb on + strand, within PP_0680 at 795.320 kb on + strand, within PP_0680 at 795.320 kb on + strand, within PP_0680 at 795.320 kb on + strand, within PP_0680 at 795.320 kb on + strand, within PP_0680 at 795.320 kb on + strand, within PP_0680 at 795.321 kb on - strand, within PP_0680 at 795.321 kb on - strand, within PP_0680 at 795.652 kb on + strand, within PP_0680 at 795.652 kb on + strand, within PP_0680 at 795.653 kb on - strand, within PP_0680 at 795.741 kb on - strand, within PP_0680 at 795.795 kb on - strand, within PP_0680 at 795.795 kb on - strand, within PP_0680 at 795.801 kb on - strand, within PP_0680 at 796.086 kb on - strand at 796.360 kb on - strand at 796.382 kb on + strand at 796.383 kb on - strand at 796.392 kb on - strand at 796.392 kb on - strand at 796.683 kb on - strand, within PP_0681 at 796.776 kb on - strand at 796.852 kb on + strand at 796.852 kb on + strand at 796.853 kb on - strand at 796.927 kb on + strand at 796.928 kb on - strand at 796.944 kb on + strand at 796.944 kb on + strand at 796.945 kb on - strand at 796.945 kb on - strand at 796.945 kb on - strand at 796.962 kb on + strand at 796.963 kb on - strand at 796.997 kb on - strand at 797.015 kb on + strand at 797.015 kb on + strand at 797.015 kb on + strand at 797.016 kb on - strand at 797.016 kb on - strand at 797.016 kb on - strand at 797.045 kb on + strand, within PP_0682 at 797.045 kb on + strand, within PP_0682 at 797.046 kb on - strand, within PP_0682
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs remove 792,891 + +0.3 792,891 + -0.8 792,891 + +1.1 792,891 + +0.8 792,892 - -0.2 792,892 - -0.9 792,924 + -1.3 792,924 + -0.2 792,925 - -1.2 792,925 - +0.7 793,059 + -2.0 793,060 - +0.6 793,121 + +0.1 793,121 + +0.2 793,121 + +0.0 793,121 + -0.7 793,122 - -1.4 793,132 - +1.2 793,136 + -1.3 793,136 + -0.4 793,136 + +0.5 793,137 - +0.0 793,137 - -0.8 793,137 - +0.5 793,137 - +0.9 793,137 - -0.6 793,257 - PP_0679 0.27 +0.0 793,257 - PP_0679 0.27 +0.4 793,276 + PP_0679 0.30 -0.6 793,295 + PP_0679 0.34 -0.5 793,295 + PP_0679 0.34 +0.5 793,295 + PP_0679 0.34 +0.9 793,295 + PP_0679 0.34 +0.1 793,296 - PP_0679 0.34 -0.3 793,296 - PP_0679 0.34 -0.3 793,296 - PP_0679 0.34 -0.1 793,296 - PP_0679 0.34 +0.8 793,296 - PP_0679 0.34 -0.3 793,385 + PP_0679 0.51 +0.7 793,386 - PP_0679 0.52 -0.3 793,467 + PP_0679 0.67 -0.1 793,608 + -1.5 793,608 + -0.4 793,609 - +1.0 793,609 - +0.2 793,777 + -1.6 793,777 + +0.1 793,777 + +0.6 793,777 + +0.2 793,778 - -0.0 793,778 - +0.6 793,778 - +0.3 793,830 + +0.4 793,831 - +2.0 793,831 - +0.0 793,847 + +0.3 793,847 + +1.5 793,939 + -0.4 794,037 - +0.9 794,045 + +0.4 794,045 + +0.6 794,045 + +1.1 794,046 - +0.4 794,046 - +0.8 794,046 - +1.1 794,142 - PP_0680 0.12 +0.5 794,142 - PP_0680 0.12 +1.2 794,282 + PP_0680 0.17 +0.4 794,327 + PP_0680 0.19 +0.8 794,328 - PP_0680 0.19 +1.2 794,328 - PP_0680 0.19 -0.3 794,328 - PP_0680 0.19 -0.4 794,328 - PP_0680 0.19 +0.3 794,328 - PP_0680 0.19 -0.1 794,384 + PP_0680 0.22 -0.4 794,666 + PP_0680 0.33 +0.8 794,667 - PP_0680 0.33 -0.2 794,698 + PP_0680 0.34 +0.3 794,698 + PP_0680 0.34 +0.8 794,699 - PP_0680 0.34 +1.0 794,699 - PP_0680 0.34 -0.6 794,699 - PP_0680 0.34 +1.1 794,769 - PP_0680 0.37 +0.7 794,841 - PP_0680 0.40 +0.6 794,867 + PP_0680 0.41 +0.8 794,868 - PP_0680 0.41 +1.0 794,891 + PP_0680 0.42 +1.7 794,891 + PP_0680 0.42 +0.7 794,891 + PP_0680 0.42 +0.4 794,891 + PP_0680 0.42 -1.0 794,891 + +0.2 794,891 + PP_0680 0.42 +0.2 794,892 - PP_0680 0.42 +0.9 794,892 - PP_0680 0.42 +0.1 794,892 - PP_0680 0.42 +0.1 794,892 - +2.7 794,892 - PP_0680 0.42 +0.1 794,892 - PP_0680 0.42 +1.2 794,893 + PP_0680 0.42 +1.1 794,893 + PP_0680 0.42 -0.4 794,893 + PP_0680 0.42 +1.2 794,894 - PP_0680 0.42 -0.6 794,894 - PP_0680 0.42 +0.1 794,894 - PP_0680 0.42 +1.0 794,988 + PP_0680 0.46 -1.8 795,137 + PP_0680 0.52 +0.1 795,137 + PP_0680 0.52 +1.0 795,137 + PP_0680 0.52 +0.2 795,138 - PP_0680 0.52 +0.4 795,138 - PP_0680 0.52 +1.2 795,138 - PP_0680 0.52 +0.5 795,141 - PP_0680 0.53 -0.6 795,141 - PP_0680 0.53 -0.1 795,141 - PP_0680 0.53 +0.7 795,141 - PP_0680 0.53 -0.2 795,141 - PP_0680 0.53 +0.7 795,320 + PP_0680 0.60 +0.1 795,320 + PP_0680 0.60 +0.4 795,320 + PP_0680 0.60 +0.5 795,320 + PP_0680 0.60 -0.2 795,320 + PP_0680 0.60 +0.2 795,320 + PP_0680 0.60 -0.3 795,321 - PP_0680 0.60 +0.8 795,321 - PP_0680 0.60 +0.4 795,652 + PP_0680 0.74 +0.4 795,652 + PP_0680 0.74 +0.6 795,653 - PP_0680 0.74 +0.9 795,741 - PP_0680 0.77 +0.5 795,795 - PP_0680 0.79 -0.5 795,795 - PP_0680 0.79 +1.3 795,801 - PP_0680 0.80 +0.3 796,086 - +0.2 796,360 - -0.7 796,382 + -0.7 796,383 - +0.9 796,392 - +0.2 796,392 - +0.1 796,683 - PP_0681 0.66 +0.2 796,776 - -0.1 796,852 + -0.3 796,852 + -0.1 796,853 - -0.1 796,927 + +0.7 796,928 - -1.0 796,944 + +0.7 796,944 + -1.1 796,945 - -0.3 796,945 - +0.3 796,945 - +3.5 796,962 + -2.3 796,963 - +1.1 796,997 - -0.1 797,015 + +0.7 797,015 + +1.5 797,015 + -2.0 797,016 - -0.8 797,016 - -0.2 797,016 - -0.4 797,045 + PP_0682 0.12 -1.6 797,045 + PP_0682 0.12 +0.2 797,046 - PP_0682 0.12 -0.4
Or see this region's nucleotide sequence