Strain Fitness in Pseudomonas putida KT2440 around PP_4651

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4650 and PP_4651 are separated by 3 nucleotidesPP_4651 and PP_4652 are separated by 343 nucleotides PP_4650: PP_4650 - Ubiquinol oxidase subunit II, cyanide insensitive, at 5,274,249 to 5,275,256 _4650 PP_4651: PP_4651 - Ubiquinol oxidase subunit I, cyanide insensitive, at 5,275,260 to 5,276,696 _4651 PP_4652: PP_4652 - putative Membrane protein, at 5,277,040 to 5,278,260 _4652 Position (kb) 5275 5276 5277Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5274.292 kb on + strandat 5274.292 kb on + strandat 5274.292 kb on + strandat 5274.292 kb on + strandat 5274.293 kb on - strandat 5274.293 kb on - strandat 5274.293 kb on - strandat 5274.293 kb on - strandat 5274.293 kb on - strandat 5274.295 kb on + strandat 5274.295 kb on + strandat 5274.295 kb on + strandat 5274.296 kb on - strandat 5274.309 kb on - strandat 5274.309 kb on - strandat 5274.310 kb on + strandat 5274.310 kb on + strandat 5274.310 kb on + strandat 5274.310 kb on + strandat 5274.310 kb on + strandat 5274.311 kb on - strandat 5274.311 kb on - strandat 5274.311 kb on - strandat 5274.311 kb on - strandat 5274.320 kb on + strandat 5274.342 kb on - strandat 5274.416 kb on + strand, within PP_4650at 5274.417 kb on - strand, within PP_4650at 5274.417 kb on - strand, within PP_4650at 5274.445 kb on + strand, within PP_4650at 5274.446 kb on - strand, within PP_4650at 5274.462 kb on + strand, within PP_4650at 5274.463 kb on - strand, within PP_4650at 5274.487 kb on + strand, within PP_4650at 5274.523 kb on + strand, within PP_4650at 5274.524 kb on - strand, within PP_4650at 5274.746 kb on - strand, within PP_4650at 5274.746 kb on - strand, within PP_4650at 5274.899 kb on + strand, within PP_4650at 5274.900 kb on - strand, within PP_4650at 5275.006 kb on + strand, within PP_4650at 5275.007 kb on - strand, within PP_4650at 5275.030 kb on + strand, within PP_4650at 5275.031 kb on - strand, within PP_4650at 5275.198 kb on + strandat 5275.198 kb on + strandat 5275.198 kb on + strandat 5275.198 kb on + strandat 5275.198 kb on + strandat 5275.199 kb on - strandat 5275.199 kb on - strandat 5275.199 kb on - strandat 5275.199 kb on - strandat 5275.414 kb on + strand, within PP_4651at 5275.414 kb on + strand, within PP_4651at 5275.414 kb on + strand, within PP_4651at 5275.415 kb on - strand, within PP_4651at 5275.445 kb on - strand, within PP_4651at 5275.445 kb on - strand, within PP_4651at 5275.445 kb on - strand, within PP_4651at 5275.486 kb on + strand, within PP_4651at 5275.486 kb on + strand, within PP_4651at 5275.486 kb on + strand, within PP_4651at 5275.486 kb on + strand, within PP_4651at 5275.487 kb on - strand, within PP_4651at 5275.487 kb on - strand, within PP_4651at 5275.487 kb on - strand, within PP_4651at 5275.528 kb on + strand, within PP_4651at 5275.528 kb on + strand, within PP_4651at 5275.529 kb on - strand, within PP_4651at 5275.529 kb on - strand, within PP_4651at 5275.639 kb on + strand, within PP_4651at 5275.640 kb on - strand, within PP_4651at 5275.640 kb on - strand, within PP_4651at 5275.745 kb on + strand, within PP_4651at 5275.850 kb on + strand, within PP_4651at 5275.851 kb on - strand, within PP_4651at 5275.965 kb on - strand, within PP_4651at 5276.270 kb on + strandat 5276.270 kb on + strand, within PP_4651at 5276.271 kb on - strand, within PP_4651at 5276.271 kb on - strand, within PP_4651at 5276.292 kb on + strand, within PP_4651at 5276.391 kb on + strand, within PP_4651at 5276.392 kb on - strand, within PP_4651at 5276.392 kb on - strandat 5276.399 kb on - strand, within PP_4651at 5276.399 kb on - strand, within PP_4651at 5276.399 kb on - strand, within PP_4651at 5276.399 kb on - strand, within PP_4651at 5276.536 kb on + strand, within PP_4651at 5276.536 kb on + strand, within PP_4651at 5276.537 kb on - strand, within PP_4651at 5276.548 kb on + strand, within PP_4651at 5276.549 kb on - strand, within PP_4651at 5276.574 kb on + strandat 5276.676 kb on + strandat 5276.676 kb on + strandat 5276.677 kb on - strandat 5276.677 kb on - strandat 5276.685 kb on + strandat 5276.686 kb on - strandat 5276.715 kb on - strandat 5276.769 kb on + strandat 5276.873 kb on - strandat 5276.873 kb on - strandat 5276.940 kb on + strandat 5276.940 kb on + strandat 5276.941 kb on - strandat 5276.941 kb on - strandat 5276.997 kb on + strandat 5276.997 kb on + strandat 5276.997 kb on + strandat 5276.998 kb on - strandat 5277.014 kb on + strandat 5277.160 kb on + strandat 5277.160 kb on + strandat 5277.161 kb on - strandat 5277.262 kb on + strand, within PP_4652at 5277.263 kb on - strand, within PP_4652at 5277.535 kb on + strand, within PP_4652at 5277.535 kb on + strand, within PP_4652at 5277.536 kb on - strand, within PP_4652at 5277.536 kb on - strand, within PP_4652at 5277.560 kb on - strand, within PP_4652at 5277.580 kb on + strandat 5277.581 kb on - strand, within PP_4652at 5277.581 kb on - strand, within PP_4652at 5277.581 kb on - strand, within PP_4652

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
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5,274,292 + +0.8
5,274,292 + +0.5
5,274,292 + +0.3
5,274,292 + +0.5
5,274,293 - +0.6
5,274,293 - +0.2
5,274,293 - -1.1
5,274,293 - +0.1
5,274,293 - -0.4
5,274,295 + +1.0
5,274,295 + -1.1
5,274,295 + -0.2
5,274,296 - +0.5
5,274,309 - -1.3
5,274,309 - +0.5
5,274,310 + +0.1
5,274,310 + +0.3
5,274,310 + +1.0
5,274,310 + +1.9
5,274,310 + -0.3
5,274,311 - +0.4
5,274,311 - +0.3
5,274,311 - +0.6
5,274,311 - -3.1
5,274,320 + +1.1
5,274,342 - +0.3
5,274,416 + PP_4650 0.17 -0.3
5,274,417 - PP_4650 0.17 +0.9
5,274,417 - PP_4650 0.17 +1.0
5,274,445 + PP_4650 0.19 -0.9
5,274,446 - PP_4650 0.20 -0.1
5,274,462 + PP_4650 0.21 +2.1
5,274,463 - PP_4650 0.21 -0.7
5,274,487 + PP_4650 0.24 +2.2
5,274,523 + PP_4650 0.27 +1.2
5,274,524 - PP_4650 0.27 -1.0
5,274,746 - PP_4650 0.49 +0.4
5,274,746 - PP_4650 0.49 -0.7
5,274,899 + PP_4650 0.64 +0.6
5,274,900 - PP_4650 0.65 +0.9
5,275,006 + PP_4650 0.75 -0.6
5,275,007 - PP_4650 0.75 +1.1
5,275,030 + PP_4650 0.77 +0.1
5,275,031 - PP_4650 0.78 -0.3
5,275,198 + -1.4
5,275,198 + +1.3
5,275,198 + +1.0
5,275,198 + +0.4
5,275,198 + -1.0
5,275,199 - -0.7
5,275,199 - -1.2
5,275,199 - +0.8
5,275,199 - +0.9
5,275,414 + PP_4651 0.11 -0.7
5,275,414 + PP_4651 0.11 -0.7
5,275,414 + PP_4651 0.11 +1.1
5,275,415 - PP_4651 0.11 -0.4
5,275,445 - PP_4651 0.13 -0.2
5,275,445 - PP_4651 0.13 +0.3
5,275,445 - PP_4651 0.13 -2.5
5,275,486 + PP_4651 0.16 -1.7
5,275,486 + PP_4651 0.16 -0.0
5,275,486 + PP_4651 0.16 -2.1
5,275,486 + PP_4651 0.16 -0.4
5,275,487 - PP_4651 0.16 -0.3
5,275,487 - PP_4651 0.16 +0.1
5,275,487 - PP_4651 0.16 -0.3
5,275,528 + PP_4651 0.19 +1.4
5,275,528 + PP_4651 0.19 -0.9
5,275,529 - PP_4651 0.19 -1.5
5,275,529 - PP_4651 0.19 -1.1
5,275,639 + PP_4651 0.26 -0.1
5,275,640 - PP_4651 0.26 -1.0
5,275,640 - PP_4651 0.26 -1.3
5,275,745 + PP_4651 0.34 -1.9
5,275,850 + PP_4651 0.41 -0.7
5,275,851 - PP_4651 0.41 +0.6
5,275,965 - PP_4651 0.49 -0.6
5,276,270 + -1.0
5,276,270 + PP_4651 0.70 -0.1
5,276,271 - PP_4651 0.70 -3.9
5,276,271 - PP_4651 0.70 -0.9
5,276,292 + PP_4651 0.72 -3.5
5,276,391 + PP_4651 0.79 -0.6
5,276,392 - PP_4651 0.79 -4.4
5,276,392 - -0.2
5,276,399 - PP_4651 0.79 -0.1
5,276,399 - PP_4651 0.79 +0.2
5,276,399 - PP_4651 0.79 -3.5
5,276,399 - PP_4651 0.79 -1.3
5,276,536 + PP_4651 0.89 -1.1
5,276,536 + PP_4651 0.89 +0.9
5,276,537 - PP_4651 0.89 -0.6
5,276,548 + PP_4651 0.90 +0.1
5,276,549 - PP_4651 0.90 -0.4
5,276,574 + -2.2
5,276,676 + +1.6
5,276,676 + -2.8
5,276,677 - -0.6
5,276,677 - +0.3
5,276,685 + +0.3
5,276,686 - +0.4
5,276,715 - +0.6
5,276,769 + -0.3
5,276,873 - +1.7
5,276,873 - -0.4
5,276,940 + -0.7
5,276,940 + +1.7
5,276,941 - -4.2
5,276,941 - +0.2
5,276,997 + +1.4
5,276,997 + -1.1
5,276,997 + +1.1
5,276,998 - +0.2
5,277,014 + -0.2
5,277,160 + -0.6
5,277,160 + +1.2
5,277,161 - +1.0
5,277,262 + PP_4652 0.18 -1.4
5,277,263 - PP_4652 0.18 -2.3
5,277,535 + PP_4652 0.41 +0.4
5,277,535 + PP_4652 0.41 +1.0
5,277,536 - PP_4652 0.41 -3.0
5,277,536 - PP_4652 0.41 -0.3
5,277,560 - PP_4652 0.43 -1.1
5,277,580 + -0.4
5,277,581 - PP_4652 0.44 -4.1
5,277,581 - PP_4652 0.44 -1.0
5,277,581 - PP_4652 0.44 -0.1

Or see this region's nucleotide sequence