Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5065 and PP_5066 are separated by 122 nucleotides PP_5066 and PP_5067 are separated by 35 nucleotides
PP_5065: PP_5065 - conserved protein of unknown function, at 5,777,424 to 5,779,574
_5065
PP_5066: PP_5066 - K(+)/H(+) antiporter NhaP2, at 5,779,697 to 5,781,490
_5066
PP_5067: PP_5067 - mechanosensitive channel protein, intermediate (smaller, MscS-like) conductance, K+ efflux, at 5,781,526 to 5,784,834
_5067
Position (kb) 5779
5780
5781
5782 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5778.709 kb on + strand, within PP_5065 at 5778.709 kb on + strand, within PP_5065 at 5778.710 kb on - strand, within PP_5065 at 5778.710 kb on - strand, within PP_5065 at 5778.718 kb on - strand, within PP_5065 at 5778.744 kb on + strand, within PP_5065 at 5778.843 kb on + strand, within PP_5065 at 5778.874 kb on + strand, within PP_5065 at 5778.875 kb on - strand, within PP_5065 at 5778.875 kb on - strand, within PP_5065 at 5779.114 kb on + strand, within PP_5065 at 5779.114 kb on + strand, within PP_5065 at 5779.114 kb on + strand, within PP_5065 at 5779.115 kb on - strand, within PP_5065 at 5779.115 kb on - strand, within PP_5065 at 5779.115 kb on - strand, within PP_5065 at 5779.115 kb on - strand, within PP_5065 at 5779.115 kb on - strand, within PP_5065 at 5779.115 kb on - strand, within PP_5065 at 5779.197 kb on + strand, within PP_5065 at 5779.198 kb on - strand, within PP_5065 at 5779.198 kb on - strand, within PP_5065 at 5779.198 kb on - strand, within PP_5065 at 5779.237 kb on + strand, within PP_5065 at 5779.265 kb on - strand, within PP_5065 at 5779.265 kb on - strand, within PP_5065 at 5779.265 kb on - strand, within PP_5065 at 5779.276 kb on + strand, within PP_5065 at 5779.276 kb on + strand, within PP_5065 at 5779.277 kb on - strand, within PP_5065 at 5779.430 kb on - strand at 5779.606 kb on + strand at 5779.606 kb on + strand at 5779.606 kb on + strand at 5779.607 kb on - strand at 5779.643 kb on + strand at 5779.644 kb on - strand at 5779.667 kb on - strand at 5779.691 kb on + strand at 5779.691 kb on + strand at 5779.691 kb on + strand at 5779.691 kb on + strand at 5779.692 kb on - strand at 5779.710 kb on + strand at 5779.740 kb on - strand at 5779.808 kb on - strand at 5779.808 kb on - strand at 5779.929 kb on - strand, within PP_5066 at 5780.389 kb on + strand, within PP_5066 at 5780.424 kb on + strand, within PP_5066 at 5780.442 kb on + strand, within PP_5066 at 5780.473 kb on + strand, within PP_5066 at 5780.492 kb on + strand, within PP_5066 at 5781.185 kb on - strand, within PP_5066 at 5781.185 kb on - strand, within PP_5066 at 5781.285 kb on - strand, within PP_5066 at 5781.363 kb on + strand at 5781.366 kb on + strand at 5781.489 kb on - strand at 5781.516 kb on + strand at 5781.517 kb on - strand at 5781.525 kb on + strand at 5781.526 kb on - strand at 5781.526 kb on - strand at 5781.526 kb on - strand at 5781.526 kb on - strand at 5781.541 kb on + strand at 5781.542 kb on - strand at 5782.372 kb on + strand, within PP_5067 at 5782.372 kb on + strand, within PP_5067 at 5782.398 kb on + strand, within PP_5067
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs remove 5,778,709 + PP_5065 0.60 -0.6 5,778,709 + PP_5065 0.60 +0.4 5,778,710 - PP_5065 0.60 +0.0 5,778,710 - PP_5065 0.60 -0.2 5,778,718 - PP_5065 0.60 +0.6 5,778,744 + PP_5065 0.61 +0.1 5,778,843 + PP_5065 0.66 +1.7 5,778,874 + PP_5065 0.67 +1.3 5,778,875 - PP_5065 0.67 -2.1 5,778,875 - PP_5065 0.67 -0.1 5,779,114 + PP_5065 0.79 -0.4 5,779,114 + PP_5065 0.79 +0.9 5,779,114 + PP_5065 0.79 +1.0 5,779,115 - PP_5065 0.79 +0.5 5,779,115 - PP_5065 0.79 -0.3 5,779,115 - PP_5065 0.79 -0.3 5,779,115 - PP_5065 0.79 -2.0 5,779,115 - PP_5065 0.79 -0.1 5,779,115 - PP_5065 0.79 +0.7 5,779,197 + PP_5065 0.82 -0.0 5,779,198 - PP_5065 0.82 +1.5 5,779,198 - PP_5065 0.82 +0.6 5,779,198 - PP_5065 0.82 -2.8 5,779,237 + PP_5065 0.84 -1.9 5,779,265 - PP_5065 0.86 +0.6 5,779,265 - PP_5065 0.86 +0.4 5,779,265 - PP_5065 0.86 -0.6 5,779,276 + PP_5065 0.86 -0.4 5,779,276 + PP_5065 0.86 +0.8 5,779,277 - PP_5065 0.86 -2.1 5,779,430 - -0.3 5,779,606 + +1.7 5,779,606 + +0.1 5,779,606 + +0.1 5,779,607 - +0.8 5,779,643 + +0.4 5,779,644 - +1.0 5,779,667 - +0.4 5,779,691 + +1.2 5,779,691 + -0.6 5,779,691 + +0.5 5,779,691 + +0.4 5,779,692 - -1.8 5,779,710 + -0.9 5,779,740 - -0.4 5,779,808 - -1.1 5,779,808 - -0.2 5,779,929 - PP_5066 0.13 -0.3 5,780,389 + PP_5066 0.39 +0.9 5,780,424 + PP_5066 0.41 +0.2 5,780,442 + PP_5066 0.42 +1.5 5,780,473 + PP_5066 0.43 +0.4 5,780,492 + PP_5066 0.44 -1.6 5,781,185 - PP_5066 0.83 -0.1 5,781,185 - PP_5066 0.83 +0.3 5,781,285 - PP_5066 0.89 +0.9 5,781,363 + -1.0 5,781,366 + +0.4 5,781,489 - -0.2 5,781,516 + -0.8 5,781,517 - +0.4 5,781,525 + +0.2 5,781,526 - +1.1 5,781,526 - -1.0 5,781,526 - -0.2 5,781,526 - -1.1 5,781,541 + +0.1 5,781,542 - +0.1 5,782,372 + PP_5067 0.26 +0.0 5,782,372 + PP_5067 0.26 -1.0 5,782,398 + PP_5067 0.26 +0.6
Or see this region's nucleotide sequence